RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 SLC2A13Q96QE2 648 aa21.47■■□□□ 1.03
CCDC88C-210ENST00000555995 HSD3B7Q9H2F3 369 aa21.47■■□□□ 1.03
CCDC88C-210ENST00000555995 NLRC4Q9NPP4 1024 aa21.47■■□□□ 1.03
CCDC88C-210ENST00000555995 PLK2Q9NYY3 685 aa21.47■■□□□ 1.03
CCDC88C-210ENST00000555995 SLC12A6Q9UHW9 1150 aa21.47■■□□□ 1.03
CCDC88C-210ENST00000555995 NAALADL1Q9UQQ1 740 aa21.47■■□□□ 1.03
CCDC88C-210ENST00000555995 FAM186AA6NE01 2351 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 GFRA2O00451 464 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 ZBTB24O43167 697 aaPredicted RBP21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 DAB1O75553 588 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 TRUB2O95900 331 aaKnown RBP21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 CISD3P0C7P0 127 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 CCDC172P0C7W6 258 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 SLC6A3Q01959 620 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 DMWDQ09019 674 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 MESP2Q0VG99 397 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 DCAF6Q58WW2 860 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 OLFML1Q6UWY5 402 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 TRIM72Q6ZMU5 477 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 PRR23BQ6ZRT6 265 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 FAM183BPQ6ZVS7 135 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 CCDC33Q8N5R6 958 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 TMA16Q96EY4 203 aaKnown RBP21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 FCRL2Q96LA5 508 aaPredicted RBP21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 FAM204AQ9H8W3 233 aa21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 MYO18AQ92614 2054 aaKnown RBP21.46■■□□□ 1.03
CCDC88C-210ENST00000555995 RPP40O75818 363 aaKnown RBP21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 GFPT2O94808 682 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 NTSR1P30989 418 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 GABRB2P47870 512 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 KLK7P49862 253 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 TAF3Q5VWG9 929 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 APTXQ7Z2E3 356 aaKnown RBP21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 CACNA2D4Q7Z3S7 1137 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 NOP9Q86U38 636 aaKnown RBP21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 ERICH1Q86X53 443 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 CCDC117Q8IWD4 279 aaPredicted RBP21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 DHX40Q8IX18 779 aaKnown RBP21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 ATP6V0D2Q8N8Y2 350 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 HJURPQ8NCD3 748 aaPredicted RBP21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 WFIKKN2Q8TEU8 576 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 DDX1Q92499 740 aaKnown RBP21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 C18orf8Q96DM3 657 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 SLC39A13Q96H72 371 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 BTN2A3PQ96KV6 586 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 FUCA2Q9BTY2 467 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 STAP1Q9ULZ2 295 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 EML5Q05BV3 1969 aa21.45■■□□□ 1.02
CCDC88C-210ENST00000555995 SPAG17Q6Q759 2223 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 MYO15AQ9UKN7 3530 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 SYCE3A1L190 88 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 TIMM44O43615 452 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 IGLV3-25P01717 112 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 ERBB2P04626 1255 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 ATP1A3P13637 1013 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 HNRNPLP14866 589 aaKnown RBP eCLIP21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 HOXD9P28356 352 aaPredicted RBP21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 CDR2Q01850 454 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 SYPL2Q5VXT5 272 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 RASSF3Q86WH2 238 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 CHPFQ8IZ52 775 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 TJP2Q9UDY2 1190 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 PAXBP1Q9Y5B6 917 aa21.44■■□□□ 1.02
CCDC88C-210ENST00000555995 VPS13AQ96RL7 3174 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 RIF1Q5UIP0 2472 aaKnown RBP21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 SGK1O00141 431 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 CHRM1P11229 460 aaPredicted RBP21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 HOXB2P14652 356 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 ABCB4P21439 1286 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 CCR1P32246 355 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 NOS2P35228 1153 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 BYSLQ13895 437 aaKnown RBP21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 USP39Q53GS9 565 aaKnown RBP21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 PIK3R6Q5UE93 754 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 SFTPA1Q8IWL2 248 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 DEFB106AQ8N104 65 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 PIWIL1Q96J94 861 aaKnown RBP21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 DDIT4Q9NX09 232 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 NOCTQ9UK39 431 aaKnown RBP21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 MYO6Q9UM54 1294 aa21.43■■□□□ 1.02
CCDC88C-210ENST00000555995 TRIM24O15164 1050 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 EPHB6O15197 1021 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 HRO43593 1189 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 TSPAN3O60637 253 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 LRP3O75074 770 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 MMEP08473 750 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 MATKP42679 507 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 PXNP49023 591 aaPredicted RBP21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 NOMO3P69849 1222 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 ARID5AQ03989 594 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 FAM133BQ5BKY9 247 aaKnown RBP21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 EMC10Q5UCC4 262 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 EGFLAMQ63HQ2 1017 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 RNF43Q68DV7 783 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 ANO7Q6IWH7 933 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 ADAM32Q8TC27 787 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 RNF34Q969K3 372 aa21.42■■□□□ 1.02
CCDC88C-210ENST00000555995 LOXL4Q96JB6 756 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms