RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PSD3Q9NYI0 1048 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 FBXW11Q9UKB1 542 aa13.19□□□□□ -0.3
VIPAS39-206ENST00000553888 A0A1W2PQH9 124 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 METTL18O95568 372 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 YWHAGP61981 247 aaKnown RBP eCLIP13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 EFTUD2Q15029 972 aaKnown RBP eCLIP13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 BBS9Q3SYG4 887 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 C4orf50Q6ZRC1 276 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 RFX8Q6ZV50 586 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 DEPDC1BQ8WUY9 529 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 COL4A4P53420 1690 aaPredicted RBP13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 ALDH2P05091 517 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 GALTP07902 379 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 RPL17P18621 184 aaKnown RBP13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 SSTR1P30872 391 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 STIP1P31948 543 aaKnown RBP13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 IRAK1P51617 712 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 GPX6P59796 221 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 DPYSQ14117 519 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 MAPRE1Q15691 268 aaKnown RBP13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 FUT10Q6P4F1 479 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 FOXR1Q6PIV2 292 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 NPAS4Q8IUM7 802 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 NPWQ8N729 165 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 CASP10Q92851 521 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 RNF34Q969K3 372 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 WDCPQ9H6R7 721 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 ELAC1Q9H777 363 aaKnown RBP13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 VPS37BQ9H9H4 285 aa13.18□□□□□ -0.3
VIPAS39-206ENST00000553888 CLUHO75153 1309 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 BCLAF3A2AJT9 711 aaKnown RBP13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 VNN2O95498 520 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 SKOR1P84550 965 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 KCNJ11Q14654 390 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 SLC45A4Q5BKX6 768 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 LRRC31Q6UY01 552 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 OTUD6BQ8N6M0 293 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 TRIM56Q9BRZ2 755 aaKnown RBP13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 SIK2Q9H0K1 926 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 ETNK1Q9HBU6 452 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 SEPT10Q9P0V9 454 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 H3BRJ5 948 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 ADAM12O43184 909 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 TRAPPC3O43617 180 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 SHOX2O60902 331 aaPredicted RBP13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 ERCC2P18074 760 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 ITGB8P26012 769 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 AP1B1Q10567 949 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 RNF19BQ6ZMZ0 732 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 VSIG1Q86XK7 387 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 OLFM3Q96PB7 478 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 QKIQ96PU8 341 aaKnown RBP eCLIP13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 PIH1D1Q9NWS0 290 aaKnown RBP13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 CHMP2BQ9UQN3 213 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 PLXNA3P51805 1871 aa13.17□□□□□ -0.3
VIPAS39-206ENST00000553888 DCLK1O15075 740 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 DGKIO75912 1065 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 APRTP07741 180 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 SRGAP2BP0DMP2 458 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 CPB1P15086 417 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 GCAP28676 217 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 GRIA1P42261 906 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 CXCR3P49682 368 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 TPI1P60174 286 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 PPP2R2AP63151 447 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 SEMA3BQ13214 749 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 DENND5BQ6ZUT9 1274 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 CENPUQ71F23 418 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 ANKRD33Q7Z3H0 272 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 FBXO36Q8NEA4 188 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 SELENOSQ9BQE4 189 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 SLC12A6Q9UHW9 1150 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 ZNF487B1APH4 448 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 POC1B-GALNT4F8VUJ3 575 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 C2CD2LO14523 706 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 BTBD8Q5XKL5 378 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 RELL1Q8IUW5 271 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 CCNYQ8ND76 341 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 IRGQQ8WZA9 623 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 RTP4Q96DX8 246 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 PGM2Q96G03 612 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 SEPT5Q99719 369 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 TSPYL1Q9H0U9 437 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 PRDM12Q9H4Q4 367 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 OR12D3Q9UGF7 316 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 COL4A6Q14031 1691 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 CDH23Q9H251 3354 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 ARHGEF37A1IGU5 675 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 ALOX15BO15296 676 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 LRIG2O94898 1065 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 TBX18O95935 607 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 MOCS2O96007 188 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 CXCL10P02778 98 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 FGFR3P22607 806 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 ACTN2P35609 894 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 MRPL58Q14197 206 aaKnown RBP13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 C6orf118Q5T5N4 469 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 PCGF5Q86SE9 256 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 CDKL3Q8IVW4 592 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 DCP1BQ8IZD4 617 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms