RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 TCF7P36402 384 aaPredicted RBP18.08■□□□□ 0.49
SYNE3-202ENST00000553340 GRIA1P42261 906 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 RPL26P61254 145 aaKnown RBP18.08■□□□□ 0.49
SYNE3-202ENST00000553340 PDE1CQ14123 709 aaPredicted RBP18.08■□□□□ 0.49
SYNE3-202ENST00000553340 PCLAFQ15004 111 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 TRIP10Q15642 601 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 CA9Q16790 459 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 EEF1DP3Q658K8 133 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 MAVSQ7Z434 540 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 ARHGAP22Q7Z5H3 698 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 RSPH3Q86UC2 560 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 DEFB107AQ8IZN7 70 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 FAM167AQ96KS9 214 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 EPAS1Q99814 870 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 MAF1Q9H063 256 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 PNPOQ9NVS9 261 aa18.08■□□□□ 0.49
SYNE3-202ENST00000553340 INO80B-WBP1J3KQ70 363 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 GAS2O43903 313 aaKnown RBP18.08■□□□□ 0.48
SYNE3-202ENST00000553340 DESP17661 470 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 SDC4P31431 198 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 CXCL9Q07325 125 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 CASC4Q6P4E1 433 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 TMEM192Q8IY95 271 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 HIPK4Q8NE63 616 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 NLRP4Q96MN2 994 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 NDNQ99608 321 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 SHCBP1LQ9BZQ2 653 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 INO80BQ9C086 356 aaPredicted RBP18.08■□□□□ 0.48
SYNE3-202ENST00000553340 ANK1P16157 1881 aa18.08■□□□□ 0.48
SYNE3-202ENST00000553340 DPYSL4O14531 572 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 MDM4O15151 490 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 B4GALT5O43286 388 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 ALDH1A2O94788 518 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 SORBS2O94875 1100 aaKnown RBP18.07■□□□□ 0.48
SYNE3-202ENST00000553340 CYP2F1P24903 491 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 DLG1Q12959 904 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 PACS1Q6VY07 963 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 TMEM130Q8N3G9 435 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 SEPT1Q8WYJ6 367 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 SORT1Q99523 831 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 GBA2Q9HCG7 927 aaPredicted RBP18.07■□□□□ 0.48
SYNE3-202ENST00000553340 XPNPEP3Q9NQH7 507 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 BTBD7Q9P203 1132 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 TSPAN16Q9UKR8 245 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 BRWD3Q6RI45 1802 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 SSC5DA1L4H1 1573 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 WDR27A2RRH5 827 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 TOMM70O94826 608 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 RAG1P15918 1043 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 ALOX15P16050 662 aaPredicted RBP18.07■□□□□ 0.48
SYNE3-202ENST00000553340 NCF2P19878 526 aaPredicted RBP18.07■□□□□ 0.48
SYNE3-202ENST00000553340 ATICP31939 592 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 DEUP1Q05D60 604 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 LSAMPQ13449 338 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 SEMA5AQ13591 1074 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 PRKG1Q13976 671 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 PDK3Q15120 406 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 STEAP4Q687X5 459 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 C10orf107Q8IVU9 208 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 UNC5BQ8IZJ1 945 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 FBXW8Q8N3Y1 598 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 CDT1Q9H211 546 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 AFG3L2Q9Y4W6 797 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 MGAMO43451 1857 aa18.07■□□□□ 0.48
SYNE3-202ENST00000553340 SF3B1O75533 1304 aaKnown RBP eCLIP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 LOC100653049A0A140TA62 436 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 PEX1O43933 1283 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 KRT34O76011 436 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 ITGAXP20702 1163 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 ADORA2AP29274 412 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 GBE1Q04446 702 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 TBL3Q12788 808 aaKnown RBP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 MAP1SQ66K74 1059 aaPredicted RBP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 LCLAT1Q6UWP7 414 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 HPS6Q86YV9 775 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 ICA1LQ8NDH6 482 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 NAT14Q8WUY8 206 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 C12orf42Q96LP6 360 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 FZD8Q9H461 694 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 PICK1Q9NRD5 415 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 SMIM31A0A1B0GVY4 71 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 LACTBL1A8MY62 500 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 ZNF487B1APH4 448 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 TXNDC9O14530 226 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 CASQ2O14958 399 aaPredicted RBP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 NIPAL4Q0D2K0 466 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 ANKRD20A4Q4UJ75 823 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 TCHHL1Q5QJ38 904 aaPredicted RBP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 HEATR6Q6AI08 1181 aaKnown RBP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 EXOC8Q8IYI6 725 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 EZH1Q92800 747 aaPredicted RBP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 ZNF668Q96K58 619 aaPredicted RBP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 BTBD9Q96Q07 612 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 VRTNQ9H8Y1 702 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 NDUFA13Q9P0J0 144 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 SLC17A6Q9P2U8 582 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 BARX2Q9UMQ3 279 aaPredicted RBP18.06■□□□□ 0.48
SYNE3-202ENST00000553340 SSX2IPQ9Y2D8 614 aa18.06■□□□□ 0.48
SYNE3-202ENST00000553340 ETS2P15036 469 aa18.05■□□□□ 0.48
SYNE3-202ENST00000553340 ZFXP17010 805 aaPredicted RBP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms