RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 HOXD9P28356 352 aaPredicted RBP11.98□□□□□ -0.49
NEK3-204ENST00000552973 HLA-FP30511 346 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 SGSHP51688 502 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 COPAP53621 1224 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 BST2Q10589 180 aaKnown RBP11.98□□□□□ -0.49
NEK3-204ENST00000552973 GRIK2Q13002 908 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 ENPP2Q13822 863 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 DCAF12L1Q5VU92 463 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 TMEM270Q6UE05 265 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 SERPINA13PQ6UXR4 307 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 METTL3Q86U44 580 aaKnown RBP11.98□□□□□ -0.49
NEK3-204ENST00000552973 CHCHD4Q8N4Q1 142 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 RBBP8NLQ8NC74 664 aaPredicted RBP11.98□□□□□ -0.49
NEK3-204ENST00000552973 TFAP2BQ92481 460 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 GATA6Q92908 595 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 KAT5Q92993 513 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 SMARCE1Q969G3 411 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 SLC35C1Q96A29 364 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 TMA16Q96EY4 203 aaKnown RBP11.98□□□□□ -0.49
NEK3-204ENST00000552973 USP36Q9P275 1121 aaKnown RBP11.98□□□□□ -0.49
NEK3-204ENST00000552973 SUSD2Q9UGT4 822 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 PCDHB4Q9Y5E5 795 aa11.98□□□□□ -0.49
NEK3-204ENST00000552973 UPK3BL1B0FP48 263 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 UPK3BL2E5RIL1 263 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 RNF225M0QZC1 329 aaPredicted RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 O00370 1275 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 NPC1O15118 1278 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 GABBR2O75899 941 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 SMC2O95347 1197 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 DAOAP59103 153 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 YWHAEP62258 255 aaKnown RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 EIF4HQ15056 248 aaKnown RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 FNDC3BQ53EP0 1204 aaKnown RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 CHST9Q7L1S5 443 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 FAM217AQ8IXS0 508 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 ZC3H3Q8IXZ2 948 aaKnown RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 UBR7Q8N806 425 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 PNPLA1Q8N8W4 532 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 KDF1Q8NAX2 398 aaPredicted RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 CLEC4CQ8WTT0 213 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 GSDMAQ96QA5 445 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 ZSWIM1Q9BR11 485 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 SLC2A11Q9BYW1 496 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 IL21RQ9HBE5 538 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 ABCC13Q9NSE7 274 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 OLA1Q9NTK5 396 aaKnown RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 ABCB8Q9NUT2 735 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 DNAAF2Q9NVR5 837 aaKnown RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 HBS1LQ9Y450 684 aaKnown RBP11.97□□□□□ -0.49
NEK3-204ENST00000552973 PCDHB9Q9Y5E1 797 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 ACACBO00763 2458 aa11.97□□□□□ -0.49
NEK3-204ENST00000552973 CACNA1BQ00975 2339 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 A0A1B0GTW7 788 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 METTL12A8MUP2 240 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 TIMM44O43615 452 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 GJB3O75712 270 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 SETSIPP0DME0 302 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 CD44P16070 742 aaKnown RBP11.96□□□□□ -0.49
NEK3-204ENST00000552973 TBXAS1P24557 533 aaPredicted RBP11.96□□□□□ -0.49
NEK3-204ENST00000552973 BRD2P25440 801 aaKnown RBP11.96□□□□□ -0.49
NEK3-204ENST00000552973 OXTRP30559 389 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 FMO5P49326 533 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 ZNF132P52740 706 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 TRIP6Q15654 476 aaKnown RBP11.96□□□□□ -0.49
NEK3-204ENST00000552973 CCDC40Q4G0X9 1142 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 PKDCCQ504Y2 493 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 COBLL1Q53SF7 1204 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 ADGRF1Q5T601 910 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 KLHL10Q6JEL2 608 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 PMF1Q6P1K2 205 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 RFWD3Q6PCD5 774 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 LCLAT1Q6UWP7 414 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 RRAGAQ7L523 313 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 ADIPOR2Q86V24 386 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 PPM1KQ8N3J5 372 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 ENGASEQ8NFI3 743 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 CADM4Q8NFZ8 388 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 OR2T3Q8NH03 318 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 SLC35F5Q8WV83 523 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 KCTD13Q8WZ19 329 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 DNASE2BQ8WZ79 361 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 SNX19Q92543 992 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 NT5C1BQ96P26 610 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 NUP58Q9BVL2 599 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 MIS12Q9H081 205 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 MTG2Q9H4K7 406 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 CNGB3Q9NQW8 809 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 STIM2Q9P246 746 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 EIF2B4Q9UI10 523 aaKnown RBP11.96□□□□□ -0.49
NEK3-204ENST00000552973 GGA2Q9UJY4 613 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 PLA2G4CQ9UP65 541 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 NEUROG3Q9Y4Z2 214 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 SLCO1B1Q9Y6L6 691 aa11.96□□□□□ -0.49
NEK3-204ENST00000552973 NUP205Q92621 2012 aa11.96□□□□□ -0.5
NEK3-204ENST00000552973 CNOT1A5YKK6 2376 aaKnown RBP11.95□□□□□ -0.5
NEK3-204ENST00000552973 M0QYV0 167 aa11.95□□□□□ -0.5
NEK3-204ENST00000552973 BCAT2O15382 392 aaPredicted RBP11.95□□□□□ -0.5
NEK3-204ENST00000552973 TBL1XO60907 577 aa11.95□□□□□ -0.5
NEK3-204ENST00000552973 PABPC1P11940 636 aaKnown RBP11.95□□□□□ -0.5
NEK3-204ENST00000552973 SLC6A4P31645 630 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms