RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CNGA3Q16281 694 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 NRF1Q16656 503 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 N4BP2L1Q5TBK1 243 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 LRRC38Q5VT99 294 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ELMSAN1Q6PJG2 1045 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 NAPRTQ6XQN6 538 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 TRIM72Q6ZMU5 477 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 ENOSF1Q7L5Y1 443 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PCGF5Q86SE9 256 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 MAP7D3Q8IWC1 876 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 NUP93Q8N1F7 819 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PQLC1Q8N2U9 271 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 KCTD6Q8NC69 237 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PPP4R1Q8TF05 950 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 CLEC4DQ8WXI8 215 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 NLRP4Q96MN2 994 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 KLHL32Q96NJ5 620 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 LENG8Q96PV6 779 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 PKP2Q99959 881 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 EPB41L1Q9H4G0 881 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 RBAKQ9NYW8 714 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-214ENST00000552783 RNF11Q9Y3C5 154 aa5.01□□□□□ -1.61
LIMA1-214ENST00000552783 LTBP1Q14766 1721 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 SLX4Q8IY92 1834 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 WNT10BO00744 389 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 DENRO43583 198 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 TBC1D12O60347 775 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CSDE1O75534 798 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 TRMUO75648 421 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 GRAP2O75791 330 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 METTL18O95568 372 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 THRAP10827 490 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 TCN1P20061 433 aaPredicted RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 RBL1P28749 1068 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CCND2P30279 289 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 ENTPD1P49961 510 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 GTF2A2P52657 109 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 MYL6P60660 151 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 COG7P83436 770 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 KRT76Q01546 638 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CXCL9Q07325 125 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CD300CQ08708 224 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 APOFQ13790 326 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 PDE1CQ14123 709 aaPredicted RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 CYTH1Q15438 398 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 TAZQ16635 292 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 C15orf59Q2T9L4 293 aaPredicted RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 ATG16L1Q676U5 607 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 PDPK2PQ6A1A2 396 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 C4orf19Q8IY42 314 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 ZSCAN18Q8TBC5 510 aaPredicted RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 MARK4Q96L34 752 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 ACO2Q99798 780 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 PDCD2LQ9BRP1 358 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 SEMA6AQ9H2E6 1030 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 WDR55Q9H6Y2 383 aaPredicted RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 IFT122Q9HBG6 1241 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 THAP1Q9NVV9 213 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 HMGXB4Q9UGU5 601 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 RIMS3Q9UJD0 308 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 AGO2Q9UKV8 859 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 DOLKQ9UPQ8 538 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CNTN6Q9UQ52 1028 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF711Q9Y462 761 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 HEY1Q9Y5J3 304 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 LAMA3Q16787 3333 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 TPP1O14773 563 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 XPO1O14980 1071 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 KCNN4O15554 427 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 EXTL3O43909 919 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 KRT37O76014 449 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CSPG5O95196 566 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 ATG7O95352 703 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 ERBB2P04626 1255 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 PSAPP07602 524 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 KRT3P12035 628 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 P4HA1P13674 534 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 DPEP1P16444 411 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 DESP17661 470 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 FGFR3P22607 806 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 PRKCHP24723 683 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CRHR1P34998 444 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CDH8P55286 799 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CBX3Q13185 183 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 OLIG2Q13516 323 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CEACAM7Q14002 265 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 PSMD6Q15008 389 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CDO1Q16878 200 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 NBPF12Q5TAG4 269 aaPredicted RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 TMEM198Q66K66 360 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 SCYL2Q6P3W7 929 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CES3Q6UWW8 571 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 TICAM1Q8IUC6 712 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 RTKN2Q8IZC4 609 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 PLD6Q8N2A8 252 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 UBR7Q8N806 425 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 ZNF781Q8N8C0 355 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 KBTBD7Q8WVZ9 684 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 NTPCRQ9BSD7 190 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 MTMR12Q9C0I1 747 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms