RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 RWDD2AQ9UIY3 292 aa11.35□□□□□ -0.59
VTI1BP3-201ENST00000550220 SLC6A14Q9UN76 642 aa11.35□□□□□ -0.59
VTI1BP3-201ENST00000550220 CNTN6Q9UQ52 1028 aa11.35□□□□□ -0.59
VTI1BP3-201ENST00000550220 CTNND2Q9UQB3 1225 aa11.35□□□□□ -0.59
VTI1BP3-201ENST00000550220 NFE2L3Q9Y4A8 694 aa11.35□□□□□ -0.59
VTI1BP3-201ENST00000550220 IGHV1OR15-9A0A0B4J2B8 117 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 TYW5A2RUC4 315 aaKnown RBP11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 RNF225M0QZC1 329 aaPredicted RBP11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 BIN1O00499 593 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 LTFP02788 710 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 ATP5BP06576 529 aaKnown RBP11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 SERPINF2P08697 491 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 CEACAM1P13688 526 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 GNSP15586 552 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 NDUFV2P19404 249 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 CD6P30203 668 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 RPL34P49207 117 aaKnown RBP11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 ATXN3P54252 364 aaPredicted RBP11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 STX17P56962 302 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 NNTQ13423 1086 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 GEN1Q17RS7 908 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 KIAA1211LQ6NV74 962 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 CCDC117Q8IWD4 279 aaPredicted RBP11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 ABCA7Q8IZY2 2146 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 CADM4Q8NFZ8 388 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 NDRG1Q92597 394 aaKnown RBP11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 PRCCQ92733 491 aaPredicted RBP11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 SERPINB11Q96P15 392 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 MED15Q96RN5 788 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 CIPCQ9C0C6 399 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 SLC32A1Q9H598 525 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 FBRSQ9HAH7 460 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 PRDM16Q9HAZ2 1276 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 ITM2CQ9NQX7 267 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 SFMBT1Q9UHJ3 866 aa11.34□□□□□ -0.59
VTI1BP3-201ENST00000550220 RALGAPA1Q6GYQ0 2036 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 MYOFQ9NZM1 2061 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 GTPBP10A4D1E9 387 aaKnown RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 UPK3BL1B0FP48 263 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 UPK3BL2E5RIL1 263 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 CDX4O14627 284 aaPredicted RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 GADD45BO75293 160 aaPredicted RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 SYPP08247 313 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 ACADMP11310 421 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 KRT5P13647 590 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 ITPKAP23677 461 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 BRD2P25440 801 aaKnown RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 GPD2P43304 727 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 RGS7P49802 495 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 NOVA1P51513 510 aaKnown RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 TBX4P57082 545 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 SNX16P57768 344 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 SHC2P98077 582 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 MTA1Q13330 715 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 FUT11Q495W5 492 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 N4BP2L1Q5TBK1 243 aaPredicted RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 KIAA1324Q6UXG2 1013 aaKnown RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 SERPINA13PQ6UXR4 307 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 ARMCX6Q7L4S7 300 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 TMPRSS6Q8IU80 811 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 AHI1Q8N157 1196 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 HDDC3Q8N4P3 179 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 FRMD1Q8N878 549 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 MLKLQ8NB16 471 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 SIPA1Q96FS4 1042 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 INTS2Q9H0H0 1204 aaKnown RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 PCED1AQ9H1Q7 454 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 UBE2TQ9NPD8 197 aaPredicted RBP11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 TMEM74BQ9NUR3 256 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 ANGPTL2Q9UKU9 493 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 CYP8B1Q9UNU6 501 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 TLR6Q9Y2C9 796 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 MYH10P35580 1976 aa11.33□□□□□ -0.6
VTI1BP3-201ENST00000550220 MYO18AQ92614 2054 aaKnown RBP11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 PATE3B3GLJ2 98 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 WASH3PC4AMC7 463 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 CAPN9O14815 690 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 ACSL4O60488 711 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 IGLV3-27P01718 113 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 CFIP05156 583 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 EPHX1P07099 455 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 NCAM1P13591 858 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 ENGP17813 658 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 HOXD9P28356 352 aaPredicted RBP11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 PMLP29590 882 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 IL12RB1P42701 662 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 ZBTB16Q05516 673 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 SFSWAPQ12872 951 aaKnown RBP11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 HNRNPDQ14103 355 aaKnown RBP11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 ZNF234Q14588 700 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 GBP6Q6ZN66 633 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 TMEM110Q86TL2 294 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 SCUBE3Q8IX30 993 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 KAT5Q92993 513 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 CNTNAP3BQ96NU0 1288 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 ZSWIM1Q9BR11 485 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 NUP58Q9BVL2 599 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 SLC4A5Q9BY07 1137 aa11.32□□□□□ -0.6
VTI1BP3-201ENST00000550220 CNTNAP3Q9BZ76 1288 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms