RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 BIRC3Q13489 604 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 CAMK2GQ13555 558 aaPredicted RBP13.38□□□□□ -0.27
SCAF11-208ENST00000546534 EIF4HQ15056 248 aaKnown RBP13.38□□□□□ -0.27
SCAF11-208ENST00000546534 RABEP1Q15276 862 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 BMT2Q1RMZ1 405 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 C6orf118Q5T5N4 469 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 CLEC20AQ6ZU45 233 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 SCD5Q86SK9 330 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 NELFCDQ8IXH7 590 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 OR2T3Q8NH03 318 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 FCRL3Q96P31 734 aaPredicted RBP13.38□□□□□ -0.27
SCAF11-208ENST00000546534 ZNF510Q9Y2H8 683 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 PCDHGA1Q9Y5H4 931 aa13.38□□□□□ -0.27
SCAF11-208ENST00000546534 CBX4O00257 560 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 PAPSS1O43252 624 aaPredicted RBP13.37□□□□□ -0.27
SCAF11-208ENST00000546534 TSPAN3O60637 253 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 FSBPO95073 299 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 VNN1O95497 513 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 SEMA4FO95754 770 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 HMBSP08397 361 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 FAM200BP0CF97 657 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 CD27P26842 260 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 CORO1AP31146 461 aaKnown RBP13.37□□□□□ -0.27
SCAF11-208ENST00000546534 HNF1BP35680 557 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 CEBPZQ03701 1054 aaKnown RBP13.37□□□□□ -0.27
SCAF11-208ENST00000546534 NCOA4Q13772 614 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 E2F5Q15329 346 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 INAVAQ3KP66 663 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 FAM173BQ6P4H8 233 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 GATAD2AQ86YP4 633 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 ORAI3Q9BRQ5 295 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 BTBD1Q9H0C5 482 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 NAGPAQ9UK23 515 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 AGO1Q9UL18 857 aaKnown RBP13.37□□□□□ -0.27
SCAF11-208ENST00000546534 PCDHA5Q9Y5H7 936 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 AK5Q9Y6K8 562 aa13.37□□□□□ -0.27
SCAF11-208ENST00000546534 MAST4O15021 2626 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 NUMA1Q14980 2115 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 TMEM131Q92545 1883 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 MUC22E2RYF6 1773 aaPredicted RBP13.36□□□□□ -0.27
SCAF11-208ENST00000546534 VPS37CA5D8V6 355 aaPredicted RBP13.36□□□□□ -0.27
SCAF11-208ENST00000546534 ENC1O14682 589 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 RRP8O43159 456 aaKnown RBP13.36□□□□□ -0.27
SCAF11-208ENST00000546534 TIMM44O43615 452 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 C4BPAP04003 597 aaKnown RBP13.36□□□□□ -0.27
SCAF11-208ENST00000546534 CYBBP04839 570 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 KIF11P52732 1056 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 PRSS12P56730 875 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 COG7P83436 770 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 ARID5AQ03989 594 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 TARDBPQ13148 414 aaKnown RBP eCLIP13.36□□□□□ -0.27
SCAF11-208ENST00000546534 DNAJC3Q13217 504 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 FAM26FQ5R3K3 315 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 PRAMEF14Q5SWL7 426 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 PCSK4Q6UW60 755 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 ADAT2Q7Z6V5 191 aaKnown RBP13.36□□□□□ -0.27
SCAF11-208ENST00000546534 UNC93AQ86WB7 457 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 DENND1CQ8IV53 801 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 ZNF276Q8N554 614 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 ZNF366Q8N895 744 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 HNRNPABQ99729 332 aaKnown RBP13.36□□□□□ -0.27
SCAF11-208ENST00000546534 SLC2A11Q9BYW1 496 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 DCLK3Q9C098 648 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 RASAL2Q9UJF2 1139 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 PTPRQQ9UMZ3 2332 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 KALRNO60229 2985 aa13.36□□□□□ -0.27
SCAF11-208ENST00000546534 CKAP5Q14008 2032 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 KNTC1P50748 2209 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 A0A1B0GTQ1 180 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 LRRIQ3A6PVS8 624 aaPredicted RBP13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CAPN9O14815 690 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 DFNA5O60443 496 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 EXOC3O60645 756 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 LDOC1O95751 146 aaPredicted RBP13.35□□□□□ -0.27
SCAF11-208ENST00000546534 RALAP11233 206 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 BCAT1P54687 386 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 RPS14P62263 151 aaKnown RBP13.35□□□□□ -0.27
SCAF11-208ENST00000546534 SNRPFP62306 86 aaKnown RBP13.35□□□□□ -0.27
SCAF11-208ENST00000546534 ASIC1P78348 528 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CLDN10P78369 228 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 EFEMP1Q12805 493 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 RTP5Q14D33 572 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 FNDC3BQ53EP0 1204 aaKnown RBP13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CCDC186Q7Z3E2 898 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 GPR155Q7Z3F1 870 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 TADA2BQ86TJ2 420 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CPXM2Q8N436 756 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 SNIP1Q8TAD8 396 aaKnown RBP13.35□□□□□ -0.27
SCAF11-208ENST00000546534 PARD3BQ8TEW8 1205 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 DDI1Q8WTU0 396 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CYB5D2Q8WUJ1 264 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CYFIP2Q96F07 1278 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CNDP2Q96KP4 475 aaKnown RBP13.35□□□□□ -0.27
SCAF11-208ENST00000546534 TWNKQ96RR1 684 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 NRSN2Q9GZP1 204 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 TNMDQ9H2S6 317 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 TMEM245Q9H330 911 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 PNPLA8Q9NP80 782 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 KBTBD4Q9NVX7 518 aa13.35□□□□□ -0.27
SCAF11-208ENST00000546534 CLIC5Q9NZA1 410 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms