RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SAP130Q9H0E3 1048 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 ABCG4Q9H172 646 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 LHX5Q9H2C1 402 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 CCSER2Q9H7U1 834 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 POLR1BQ9H9Y6 1135 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 THSD1Q9NS62 852 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 PGPEP1Q9NXJ5 209 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 EHD2Q9NZN4 543 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 WDR35Q9P2L0 1181 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 CPSF3Q9UKF6 684 aaKnown RBP5.05□□□□□ -1.6
LIMS1-214ENST00000542845 SNX9Q9Y5X1 595 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 PTPN13Q12923 2485 aa5.05□□□□□ -1.6
LIMS1-214ENST00000542845 A6NJY4 79 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ANKRD63C9JTQ0 380 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 F8VP50 259 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 VILLO15195 856 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 CACNG3O60359 315 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 TSPAN3O60637 253 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 CSO75390 466 aaKnown RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 GJB6O95452 261 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 DNTTP04053 509 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 WNT1P04628 370 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 OR52Z1P0C646 297 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 CISD3P0C7P0 127 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 PLS3P13797 630 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ITGB6P18564 788 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 VAMP1P23763 118 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 LMO2P25791 158 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 YWHAQP27348 245 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 CD38P28907 300 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 PCSK1P29120 753 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 CDC25AP30304 524 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 MAGEA11P43364 429 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 LSSP48449 732 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 LHX1P48742 406 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ARRB1P49407 418 aaPredicted RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 RACK1P63244 317 aaKnown RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 GUCY1B3Q02153 619 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 MAPK7Q13164 816 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ILKQ13418 452 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ZNF234Q14588 700 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 GEN1Q17RS7 908 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ARL13BQ3SXY8 428 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 CFAP221Q4G0U5 840 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 HS1BP3Q53T59 392 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 MDH1BQ5I0G3 518 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 HECTD3Q5T447 861 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 PPP1R26Q5T8A7 1209 aaPredicted RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 SCARA3Q6AZY7 606 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ADALQ6DHV7 355 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 SERPINA13PQ6UXR4 307 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 C1orf186Q6ZWK4 172 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 RUFY3Q7L099 469 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ADGRF2Q8IZF7 708 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 FAM177A1Q8N128 213 aaPredicted RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 TMEM86AQ8N2M4 240 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 CSGALNACT2Q8N6G5 542 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 SNRNP27Q8WVK2 155 aaKnown RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 SREK1Q8WXA9 508 aaKnown RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 SORCS1Q8WY21 1168 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 FUBP3Q96I24 572 aaKnown RBP eCLIP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 FAM84AQ96KN4 292 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 DMRTB1Q96MA1 342 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 PSMG3-AS1Q96PY0 264 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 DEPDC7Q96QD5 511 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 CCNL2Q96S94 520 aaPredicted RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 PKMYT1Q99640 499 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 SYT15Q9BQS2 421 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 NTPCRQ9BSD7 190 aaKnown RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 AGXT2Q9BYV1 514 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ZHX3Q9H4I2 956 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 OSGEPQ9NPF4 335 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 GDF3Q9NR23 364 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 STARD5Q9NSY2 213 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 STIM2Q9P246 746 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 THAP10Q9P2Z0 257 aaPredicted RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ORC3Q9UBD5 711 aaPredicted RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 PLEKHB1Q9UF11 243 aaPredicted RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 SATB2Q9UPW6 733 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 NCKAP1Q9Y2A7 1128 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 DERAQ9Y315 318 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 R3HCC1Q9Y3T6 440 aaKnown RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 KNL1Q8NG31 2342 aa5.04□□□□□ -1.6
LIMS1-214ENST00000542845 ZFC3H1O60293 1989 aaKnown RBP5.04□□□□□ -1.6
LIMS1-214ENST00000542845 TDRD6O60522 2096 aaKnown RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 A0A0B4J269 797 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 PP2D1A8MPX8 630 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 TISP43B9A030 160 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 K7ENM7 598 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 AGRPO00253 132 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CLDN5O00501 218 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 WNT9AO14904 365 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 FFAR2O15552 330 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 CYP26A1O43174 497 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 PAPSS1O43252 624 aaPredicted RBP5.03□□□□□ -1.6
LIMS1-214ENST00000542845 EFSO43281 561 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 SIGLEC6O43699 453 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 OPA1O60313 960 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 FAM189A1O60320 539 aa5.03□□□□□ -1.6
LIMS1-214ENST00000542845 PPFIA2O75334 1257 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms