RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 SRSF4Q08170 494 aaKnown RBP3.69□□□□□ -1.82
USP28-210ENST00000542033 LMOD3Q0VAK6 560 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 PPFIA1Q13136 1202 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 CBFBQ13951 182 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 LARS2Q15031 903 aaKnown RBP3.69□□□□□ -1.82
USP28-210ENST00000542033 PFKFB4Q16877 469 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 ZACNQ401N2 412 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 ZKSCAN2Q63HK3 967 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 CCDC144NLQ6NUI1 221 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 SRRM1Q8IYB3 904 aaKnown RBP3.69□□□□□ -1.82
USP28-210ENST00000542033 NRSN1Q8IZ57 195 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 MYCT1Q8N699 235 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 LINC01465Q8N7H1 131 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 FAM71BQ8TC56 605 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 WDR60Q8WVS4 1066 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 TRIM44Q96DX7 344 aaPredicted RBP3.69□□□□□ -1.82
USP28-210ENST00000542033 HIC2Q96JB3 615 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 RITA1Q96K30 269 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 SAP30LQ9HAJ7 183 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 VPS45Q9NRW7 570 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 FBXO28Q9NVF7 368 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 C9orf78Q9NZ63 289 aaPredicted RBP3.69□□□□□ -1.82
USP28-210ENST00000542033 FZD4Q9ULV1 537 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 MAFFQ9ULX9 164 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 PCDHB2Q9Y5E7 798 aa3.69□□□□□ -1.82
USP28-210ENST00000542033 LGALS16A8MUM7 142 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 TTC34A8MYJ7 566 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 H3BNC9 293 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 PCDH17O14917 1159 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 NPC1O15118 1278 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 ANXA6P08133 673 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 NHLRC4P0CG21 123 aaPredicted RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 MATN1P21941 496 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 AKT1P31749 480 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 MAN1A1P33908 653 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 IGHMBP2P38935 993 aaKnown RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 WDR5P61964 334 aaKnown RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 RAE1P78406 368 aaKnown RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 PTK2BQ14289 1009 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 EZH2Q15910 746 aaKnown RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 PFKFB3Q16875 520 aaPredicted RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 TRIM71Q2Q1W2 868 aaKnown RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 WDR78Q5VTH9 848 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 FAM90A2PQ658T7 463 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 RINT1Q6NUQ1 792 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 ZNF782Q6ZMW2 699 aaPredicted RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 PIK3AP1Q6ZUJ8 805 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 ATG16L2Q8NAA4 619 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 OR52L2PQ8NGH6 319 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 STYXQ8WUJ0 223 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 TRAPPC12Q8WVT3 735 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 PRR11Q96HE9 360 aaPredicted RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 C5orf34Q96MH7 638 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 CHMP4BQ9H444 224 aaKnown RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 RXFP3Q9NSD7 469 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 GAR1Q9NY12 217 aaKnown RBP3.68□□□□□ -1.82
USP28-210ENST00000542033 LRFN1Q9P244 771 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 SWAP70Q9UH65 585 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 PRDM4Q9UKN5 801 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 PCDHGB3Q9Y5G1 929 aa3.68□□□□□ -1.82
USP28-210ENST00000542033 CCDC187A0A096LP49 1063 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 FCHO1O14526 889 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 CTIFO43310 598 aaKnown RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 DNPH1O43598 174 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 TAF5LO75529 589 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 TNFRSF6BO95407 300 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 ITGA2BP08514 1039 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 ITGA5P08648 1049 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 CYP2D6P10635 497 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 CYP2A6P11509 494 aaPredicted RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 ALADP13716 330 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 DUSP1P28562 367 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 POLE2P56282 527 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 IRX6P78412 446 aaPredicted RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 FOXF2Q12947 444 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 TBX2Q13207 712 aaPredicted RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 ZNF268Q14587 947 aaPredicted RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 GRM4Q14833 912 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 CNGA3Q16281 694 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 SRSF7Q16629 238 aaKnown RBP eCLIP3.67□□□□□ -1.82
USP28-210ENST00000542033 AWAT1Q58HT5 328 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 ATPAF1Q5TC12 328 aaPredicted RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 JAKMIP3Q5VZ66 844 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 MIS18BP1Q6P0N0 1132 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 MSANTD2Q6P1R3 559 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 RANBP10Q6VN20 620 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 MPP4Q96JB8 637 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 FAR2Q96K12 515 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 RMDN3Q96TC7 470 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 RNF26Q9BY78 433 aaPredicted RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 ZHX3Q9H4I2 956 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 FSCN3Q9NQT6 498 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 ABHD10Q9NUJ1 306 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 ARL8BQ9NVJ2 186 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 SAGE1Q9NXZ1 904 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 DACT1Q9NYF0 836 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.67□□□□□ -1.82
USP28-210ENST00000542033 FBXO9Q9UK97 447 aaPredicted RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 NFU1Q9UMS0 254 aa3.67□□□□□ -1.82
USP28-210ENST00000542033 GPR52Q9Y2T5 361 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms