RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 APC2O95996 2303 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 PLXNA2O75051 1894 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 FAM237AA0A1B0GTK4 181 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 A0A1B0GVT2 93 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 METTL12A8MUP2 240 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 MSI1O43347 362 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 GABBR2O75899 941 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 IGLV3-19P01714 112 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 EPHX1P07099 455 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 CHKAP35790 457 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 PSMC2P35998 433 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 TKTL1P51854 596 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 MCCD1P59942 119 aaPredicted RBP16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 COG7P83436 770 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 PDE4CQ08493 712 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 SLC14A1Q13336 389 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 ADAM9Q13443 819 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 GOLGA7BQ2TAP0 167 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 CBWD6Q4V339 395 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 CBWD3Q5JTY5 395 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 CBWD5Q5RIA9 395 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 ARHGAP17Q68EM7 881 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 ATL3Q6DD88 541 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 C19orf48Q6RUI8 117 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 FMNL3Q8IVF7 1028 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 CPXM2Q8N436 756 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 MDM1Q8TC05 714 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 DDI1Q8WTU0 396 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 EDEM1Q92611 657 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 TMEM176AQ96HP8 235 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 MTG2Q9H4K7 406 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 GAREM1Q9H706 876 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 SFMBT1Q9UHJ3 866 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 CFAP45Q9UL16 551 aa16.18■□□□□ 0.18
CLSTN3-213ENST00000541953 BCAT2O15382 392 aaPredicted RBP16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 KRT13P13646 458 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 GNSP15586 552 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 ACSL1P33121 698 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 SYKP43405 635 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 MXI1P50539 228 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 ADIGQ0VDE8 80 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 TRIP4Q15650 581 aaPredicted RBP16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 PTPRNQ16849 979 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 HLA-BQ31612 363 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 KCNT1Q5JUK3 1230 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 KRT39Q6A163 491 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 PM20D1Q6GTS8 502 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 SERPINA13PQ6UXR4 307 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 CCNI2Q6ZMN8 369 aaPredicted RBP16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 RSRC2Q7L4I2 434 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 TADA2BQ86TJ2 420 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 HSCBQ8IWL3 235 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 GUF1Q8N442 669 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 CADM4Q8NFZ8 388 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 PRCCQ92733 491 aaPredicted RBP16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 DCLK3Q9C098 648 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 TSPAN16Q9UKR8 245 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 ZNF510Q9Y2H8 683 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 GPSM3Q9Y4H4 160 aa16.17■□□□□ 0.18
CLSTN3-213ENST00000541953 YJEFN3A6XGL0 299 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 E7ENQ6 273 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 KCNK3O14649 394 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 SYNCRIPO60506 623 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 ZBED1O96006 694 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 CALCAP01258 141 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 ATXN1LP0C7T5 689 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 CSNK1EP49674 416 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 CAMK2GQ13555 558 aaPredicted RBP16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 ADIPOR2Q86V24 386 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 UBR7Q8N806 425 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 ANKRD52Q8NB46 1076 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 SETD7Q8WTS6 366 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 SNX19Q92543 992 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 MYEOVQ96EZ4 313 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 CDK5RAP1Q96SZ6 601 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 TMEM245Q9H330 911 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 TM7SF3Q9NS93 570 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 RAB20Q9NX57 234 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 USP25Q9UHP3 1055 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 NFE2L3Q9Y4A8 694 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 PCDHB9Q9Y5E1 797 aa16.16■□□□□ 0.18
CLSTN3-213ENST00000541953 PIK3R2O00459 728 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 MYL1P05976 194 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 ENPEPQ07075 957 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 EIF4HQ15056 248 aaKnown RBP16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 KIF19Q2TAC6 998 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 KRBA2Q6ZNG9 492 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 GLRX5Q86SX6 157 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 FBXL13Q8NEE6 735 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 OR2T3Q8NH03 318 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 UBA3Q8TBC4 463 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 UCMAQ8WVF2 138 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 PLD4Q96BZ4 506 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 SPATA32Q96LK8 384 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 ZSWIM1Q9BR11 485 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 ORAI3Q9BRQ5 295 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 UBXN6Q9BZV1 441 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 ZDHHC5Q9C0B5 715 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 ABCB8Q9NUT2 735 aa16.15■□□□□ 0.18
CLSTN3-213ENST00000541953 NYNRINQ9P2P1 1898 aaKnown RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms