RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MSI1O43347 362 aaKnown RBP15.02□□□□□ -0.01
CLIP1-216ENST00000541410 SELPP16109 830 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 DSC1Q08554 894 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 DDR2Q16832 855 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 CDKL3Q8IVW4 592 aaPredicted RBP15.02□□□□□ -0.01
CLIP1-216ENST00000541410 URGCPQ8TCY9 931 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 CFAP36Q96G28 342 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 UROC1Q96N76 676 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 COLEC11Q9BWP8 271 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 SFMBT1Q9UHJ3 866 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 RABGEF1Q9UJ41 708 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 DSEQ9UL01 958 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 SQORQ9Y6N5 450 aa15.02□□□□□ -0.01
CLIP1-216ENST00000541410 MYO16Q9Y6X6 1858 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 LAMA3Q16787 3333 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 A6NNZ2 444 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 H3BRJ5 948 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 TADA2AO75478 443 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 SOAT2O75908 522 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 ABHD2P08910 425 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 SLC5A3P53794 718 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 YWHAGP61981 247 aaKnown RBP eCLIP15.01□□□□□ -0.01
CLIP1-216ENST00000541410 TUBB8Q3ZCM7 444 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 CEP128Q6ZU80 1094 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 VSIG1Q86XK7 387 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 ABI1Q8IZP0 508 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 TFB1MQ8WVM0 346 aaKnown RBP15.01□□□□□ -0.01
CLIP1-216ENST00000541410 SIK2Q9H0K1 926 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 WDCPQ9H6R7 721 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 EURLQ9NYK6 297 aa15.01□□□□□ -0.01
CLIP1-216ENST00000541410 A0A1W2PPM1 405 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 KCNK1O00180 336 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 TCEA3O75764 348 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 ZFXP17010 805 aaPredicted RBP15□□□□□ -0.01
CLIP1-216ENST00000541410 ERCC2P18074 760 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 KRT15P19012 456 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 MAP2K2P36507 400 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 CCL23P55773 120 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 TPI1P60174 286 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 C4orf33Q8N1A6 199 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15□□□□□ -0.01
CLIP1-216ENST00000541410 ATP11CQ8NB49 1132 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 HTR3CQ8WXA8 447 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 RTP4Q96DX8 246 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 QKIQ96PU8 341 aaKnown RBP eCLIP15□□□□□ -0.01
CLIP1-216ENST00000541410 KLC2Q9H0B6 622 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 PRDM12Q9H4Q4 367 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 FBXW11Q9UKB1 542 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 CFAP69A5D8W1 941 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 E7ESA3 106 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 ENPP3O14638 875 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 DGKIO75912 1065 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 SRGAP2BP0DMP2 458 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 NR2C2P49116 596 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 FAM189BP81408 668 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 SMAD1Q15797 465 aaKnown RBP15□□□□□ -0.01
CLIP1-216ENST00000541410 ARHGEF18Q6ZSZ5 1173 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 CAND1Q86VP6 1230 aaKnown RBP15□□□□□ -0.01
CLIP1-216ENST00000541410 FAM126BQ8IXS8 530 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 MPP5Q8N3R9 675 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 NPWQ8N729 165 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 DQX1Q8TE96 717 aaKnown RBP15□□□□□ -0.01
CLIP1-216ENST00000541410 MAML1Q92585 1016 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 OLFM3Q96PB7 478 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 GPR62Q9BZJ7 368 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 PPP1R12CQ9BZL4 782 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 ZMYND8Q9ULU4 1186 aaPredicted RBP15□□□□□ -0.01
CLIP1-216ENST00000541410 PCDHB8Q9UN66 801 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 PHF24Q9UPV7 400 aa15□□□□□ -0.01
CLIP1-216ENST00000541410 ZNF487B1APH4 448 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 CHADO15335 359 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 FAM107AO95990 144 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 OLIG2Q13516 323 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 DPYSQ14117 519 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 ANKRD20A2Q5SQ80 823 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 ANKRD20A1Q5TYW2 823 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 FAM171A1Q5VUB5 890 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 ANKRD20A3Q5VUR7 823 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 PM20D1Q6GTS8 502 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 VPS52Q8N1B4 723 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 ATAD1Q8NBU5 361 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 DYDC1Q8WWB3 177 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 P2RY11Q96G91 374 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 OR12D3Q9UGF7 316 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 LGALS13Q9UHV8 139 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 PCDHB7Q9Y5E2 793 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.99□□□□□ -0.01
CLIP1-216ENST00000541410 RNF103O00237 685 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 CRADDP78560 199 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 VARS2Q5ST30 1063 aaKnown RBP14.99□□□□□ -0.01
CLIP1-216ENST00000541410 PRPF39Q86UA1 669 aaKnown RBP14.99□□□□□ -0.01
CLIP1-216ENST00000541410 KLF6Q99612 283 aaPredicted RBP14.99□□□□□ -0.01
CLIP1-216ENST00000541410 PAIP2Q9BPZ3 127 aaKnown RBP14.99□□□□□ -0.01
CLIP1-216ENST00000541410 NMUR1Q9HB89 426 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 TEX264Q9Y6I9 313 aa14.99□□□□□ -0.01
CLIP1-216ENST00000541410 GOLGA8RI6L899 631 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 EBAG9O00559 213 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 NDC80O14777 642 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 DCLK1O15075 740 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 GNRH1P01148 92 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms