RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 SOX9P48436 509 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 ZNF143P52747 638 aaPredicted RBP13.51□□□□□ -0.25
CCDC42-202ENST00000539522 VCPP55072 806 aaKnown RBP13.51□□□□□ -0.25
CCDC42-202ENST00000539522 TBX4P57082 545 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 ATP11AP98196 1134 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 MESP2Q0VG99 397 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 RHBDF2Q6PJF5 856 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 H2AFVQ71UI9 128 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 TADA2BQ86TJ2 420 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 DENND1CQ8IV53 801 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 ZNF683Q8IZ20 524 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 TTC16Q8NEE8 873 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 TTC8Q8TAM2 541 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 GOLGA1Q92805 767 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 E2F7Q96AV8 911 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 PLD4Q96BZ4 506 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 SERPINB11Q96P15 392 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 PEBP4Q96S96 227 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 PRMT1Q99873 361 aaKnown RBP13.51□□□□□ -0.25
CCDC42-202ENST00000539522 TRMT61BQ9BVS5 477 aaKnown RBP13.51□□□□□ -0.25
CCDC42-202ENST00000539522 NUP85Q9BW27 656 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 NACA2Q9H009 215 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 DDIT4Q9NX09 232 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 ARHGEF38Q9NXL2 777 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 COX16Q9P0S2 106 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 SNX10Q9Y5X0 201 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 DUSP10Q9Y6W6 482 aa13.51□□□□□ -0.25
CCDC42-202ENST00000539522 KRBA1A5PL33 1030 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 ANTXRLA6NF34 631 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 USP27XA6NNY8 438 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 KIF2AO00139 706 aaPredicted RBP13.5□□□□□ -0.25
CCDC42-202ENST00000539522 CYP17A1P05093 508 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 GGCXP38435 758 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 IRAK1P51617 712 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 COG7P83436 770 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 NME3Q13232 169 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 TCEAL1Q15170 157 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 CDO1Q16878 200 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 PIK3R6Q5UE93 754 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 TXNDC11Q6PKC3 985 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 KIAA1328Q86T90 577 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 C12orf40Q86WS4 652 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 TMEM25Q86YD3 366 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 ZNF687Q8N1G0 1237 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 CCDC185Q8N715 623 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 KIAA1958Q8N8K9 716 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 FAM172AQ8WUF8 416 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 PRICKLE1Q96MT3 831 aaPredicted RBP13.5□□□□□ -0.25
CCDC42-202ENST00000539522 TRIM62Q9BVG3 475 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 FAM204AQ9H8W3 233 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 TRPV5Q9NQA5 729 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 DUS2Q9NX74 493 aaKnown RBP13.5□□□□□ -0.25
CCDC42-202ENST00000539522 NEU3Q9UQ49 428 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 DOCK4Q8N1I0 1966 aa13.5□□□□□ -0.25
CCDC42-202ENST00000539522 TECTAO75443 2155 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 TRDMT1O14717 391 aaKnown RBP13.49□□□□□ -0.25
CCDC42-202ENST00000539522 MTA2O94776 668 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 VAV2P52735 878 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 ZXDAP98168 799 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 DEUP1Q05D60 604 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 KIF5AQ12840 1032 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 PPP2R5DQ14738 602 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 ARHGAP29Q52LW3 1261 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 RNF43Q68DV7 783 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 TXNRD3NBQ6F5E7 133 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 STRADAQ7RTN6 431 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 C14orf80Q86SX3 495 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 FAM131BQ86XD5 332 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 DDX42Q86XP3 938 aaKnown RBP eCLIP13.49□□□□□ -0.25
CCDC42-202ENST00000539522 SLC35G2Q8TBE7 412 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 FNIP1Q8TF40 1166 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 EZH1Q92800 747 aaPredicted RBP13.49□□□□□ -0.25
CCDC42-202ENST00000539522 TRIM11Q96F44 468 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 CNPY3Q9BT09 278 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 TSGA10Q9BZW7 698 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 ECT2Q9H8V3 914 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 FBRSL1Q9HCM7 1045 aaKnown RBP13.49□□□□□ -0.25
CCDC42-202ENST00000539522 HEBP1Q9NRV9 189 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 RRN3Q9NYV6 651 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 TRIM10Q9UDY6 481 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 INTUQ9ULD6 942 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 CLEC4EQ9ULY5 219 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 SH3BP1Q9Y3L3 701 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 NCOR1O75376 2440 aa13.49□□□□□ -0.25
CCDC42-202ENST00000539522 FAM72CH0Y354 149 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 TRIM24O15164 1050 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 PJA2O43164 708 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 KRT86O43790 486 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 ACSL4O60488 711 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 LRCH4O75427 683 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 PAGE1O75459 146 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 CHRM1P11229 460 aaPredicted RBP13.48□□□□□ -0.25
CCDC42-202ENST00000539522 IL1R2P27930 398 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 SDC4P31431 198 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 RDXP35241 583 aaKnown RBP13.48□□□□□ -0.25
CCDC42-202ENST00000539522 RUNX3Q13761 415 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 DHCR24Q15392 516 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 MS4A13Q5J8X5 152 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 LY6G5CQ5SRR4 150 aa13.48□□□□□ -0.25
CCDC42-202ENST00000539522 FAM72AQ5TYM5 149 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms