RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 STARD13Q9Y3M8 1113 aa13.14□□□□□ -0.31
CLSTN3-208ENST00000538933 ITIH6Q6UXX5 1313 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 SLC9A3R1O14745 358 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 CST3P01034 146 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 TBXAS1P24557 533 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 ACAT1P24752 427 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 EIF2S3P41091 472 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 MFAP3P55082 362 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 USP46P62068 366 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 KCNMA1Q12791 1236 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 RAPGEF1Q13905 1077 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 PTPRNQ16849 979 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 TSR1Q2NL82 804 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 INTS6LQ5JSJ4 861 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 SCARA3Q6AZY7 606 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 RGL4Q8IZJ4 473 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 LRRC52Q8N7C0 313 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 ZNF513Q8N8E2 541 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 CPLX3Q8WVH0 158 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 SEMA4DQ92854 862 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 MMS19Q96T76 1030 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 ACOX2Q99424 681 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 CDC6Q99741 560 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 GAREM1Q9H706 876 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 PRDM16Q9HAZ2 1276 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 UBE2TQ9NPD8 197 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 NLRC4Q9NPP4 1024 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 PLCB1Q9NQ66 1216 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 TM7SF3Q9NS93 570 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 NXF1Q9UBU9 619 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 L1RE1Q9UN81 338 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 BTBD3Q9Y2F9 522 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 FNDC3AQ9Y2H6 1198 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 SIK3Q9Y2K2 1263 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 DAAM1Q9Y4D1 1078 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 PCDHGB2Q9Y5G2 931 aa13.13□□□□□ -0.31
CLSTN3-208ENST00000538933 A0A1B0GTW7 788 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 TBC1D3BA6NDS4 549 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 ZNF840PA6NDX5 716 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 E9PAM4 449 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 TRIM24O15164 1050 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 HCRTO43612 131 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 TLX3O43711 291 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 CILPO75339 1184 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 ASS1P00966 412 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 ADH5P11766 374 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 HOXB2P14652 356 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 GNSP15586 552 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 NTSR1P30989 418 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 WASP42768 502 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 MAGEA11P43364 429 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 PDE6CP51160 858 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 POLR2FP61218 127 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 YWHAEP62258 255 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 CCDC173Q0VFZ6 552 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 ARHGAP44Q17R89 818 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 WDR72Q3MJ13 1102 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 LY6G5CQ5SRR4 150 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 SYCP2LQ5T4T6 812 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 KLHDC7AQ5VTJ3 777 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 SPOPLQ6IQ16 392 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 FAM171BQ6P995 826 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 SCARA5Q6ZMJ2 495 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 TRMT11Q7Z4G4 463 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 OSTM1Q86WC4 334 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 C1orf216Q8TAB5 229 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 RHBDD1Q8TEB9 315 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 IPO4Q8TEX9 1081 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 FOXJ1Q92949 421 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 SPATA17Q96L03 361 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 NIF3L1Q9GZT8 377 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 SLC6A17Q9H1V8 727 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 DDX43Q9NXZ2 648 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 SIX4Q9UIU6 781 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 DNAJC12Q9UKB3 198 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 SNX9Q9Y5X1 595 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 CPQQ9Y646 472 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 MYH10P35580 1976 aa13.12□□□□□ -0.31
CLSTN3-208ENST00000538933 TULP3O75386 442 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 ADH1CP00326 375 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 UCHL3P15374 230 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 PBX1P40424 430 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 USP8P40818 1118 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 HLA-BQ31612 363 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 WDR45BQ5MNZ6 344 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 RRAGAQ7L523 313 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 ENOSF1Q7L5Y1 443 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 SCN4BQ8IWT1 228 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 NAT16Q8N8M0 369 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 CXorf38Q8TB03 319 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 TATDN2Q93075 761 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 ELMO3Q96BJ8 720 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 FUBP3Q96I24 572 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 MRGPRX1Q96LB2 322 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 GABRG3Q99928 467 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 TTLL2Q9BWV7 592 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 DNAI2Q9GZS0 605 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 SMPD4Q9NXE4 827 aa13.11□□□□□ -0.31
CLSTN3-208ENST00000538933 CFAP97Q9P2B7 532 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms