RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 RNF14Q9UBS8 474 aa17.91■□□□□ 0.46
CLN6-202ENST00000538696 LCMT1Q9UIC8 334 aa17.91■□□□□ 0.46
CLN6-202ENST00000538696 ARHGAP26Q9UNA1 814 aa17.91■□□□□ 0.46
CLN6-202ENST00000538696 CCL26Q9Y258 94 aa17.91■□□□□ 0.46
CLN6-202ENST00000538696 SLC12A8A0AV02 714 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 EFCAB8A8MWE9 144 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 LAMP2P13473 410 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 TCF4P15884 667 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 FCARP24071 287 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 GJC1P36383 396 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 KCNQ1P51787 676 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 ATP11AP98196 1134 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 USP4Q13107 963 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 EIF4EBP2Q13542 120 aaPredicted RBP17.9■□□□□ 0.46
CLN6-202ENST00000538696 PIGHQ14442 188 aaPredicted RBP17.9■□□□□ 0.46
CLN6-202ENST00000538696 RAB6CQ53S08 254 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 OTOP3Q7RTS5 596 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 ARID3BQ8IVW6 561 aaPredicted RBP17.9■□□□□ 0.46
CLN6-202ENST00000538696 TDRD5Q8NAT2 981 aaKnown RBP17.9■□□□□ 0.46
CLN6-202ENST00000538696 RIN3Q8TB24 985 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 ACTRT1Q8TDG2 376 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 SMARCD2Q92925 531 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 USP13Q92995 863 aaPredicted RBP17.9■□□□□ 0.46
CLN6-202ENST00000538696 PGAP3Q96FM1 320 aaPredicted RBP17.9■□□□□ 0.46
CLN6-202ENST00000538696 RAB6CQ9H0N0 254 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 DDIT4Q9NX09 232 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 EPS15L1Q9UBC2 864 aa17.9■□□□□ 0.46
CLN6-202ENST00000538696 ZFP37Q9Y6Q3 630 aaPredicted RBP17.9■□□□□ 0.46
CLN6-202ENST00000538696 SYNJ2BP-COX16A0A087WUM0 186 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 C2CD4DB7Z1M9 353 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 M0QYT0 321 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 PGRMC1O00264 195 aaKnown RBP17.89■□□□□ 0.45
CLN6-202ENST00000538696 PSTPIP1O43586 416 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 HMBSP08397 361 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 SSR1P43307 286 aaKnown RBP17.89■□□□□ 0.45
CLN6-202ENST00000538696 ATXN1P54253 815 aaKnown RBP17.89■□□□□ 0.45
CLN6-202ENST00000538696 RWDD2BP57060 319 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 NNTQ13423 1086 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 TRIP4Q15650 581 aaPredicted RBP17.89■□□□□ 0.45
CLN6-202ENST00000538696 CDO1Q16878 200 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 ERCC6LQ2NKX8 1250 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 SH3PXD2AQ5TCZ1 1133 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 RHOT1Q8IXI2 618 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 ARFGAP1Q8N6T3 406 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 ST13P5Q8NFI4 369 aaPredicted RBP17.89■□□□□ 0.45
CLN6-202ENST00000538696 FAM172AQ8WUF8 416 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 CENPIQ92674 756 aaPredicted RBP17.89■□□□□ 0.45
CLN6-202ENST00000538696 WBP2Q969T9 261 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 RSPRY1Q96DX4 576 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 FCRL2Q96LA5 508 aaPredicted RBP17.89■□□□□ 0.45
CLN6-202ENST00000538696 CNPY3Q9BT09 278 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 GKN1Q9NS71 199 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 PIGVQ9NUD9 493 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 TDP1Q9NUW8 608 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 COX16Q9P0S2 106 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 FAM50BQ9Y247 325 aa17.89■□□□□ 0.45
CLN6-202ENST00000538696 HBS1LQ9Y450 684 aaKnown RBP17.89■□□□□ 0.45
CLN6-202ENST00000538696 LEFTY2O00292 366 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 STC2O76061 302 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 ENDOD1O94919 500 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 IGLV3-27P01718 113 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 IRF1P10914 325 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 PYGMP11217 842 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 RDXP35241 583 aaKnown RBP17.88■□□□□ 0.45
CLN6-202ENST00000538696 VIPR2P41587 438 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 TBX4P57082 545 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 DEUP1Q05D60 604 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 NME3Q13232 169 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 ELF2Q15723 593 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 ZNF77Q15935 545 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 STRADAQ7RTN6 431 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 SPATA4Q8NEY3 305 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 SH3RF2Q8TEC5 729 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 UBXN4Q92575 508 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 ACSF2Q96CM8 615 aaPredicted RBP17.88■□□□□ 0.45
CLN6-202ENST00000538696 SLC39A13Q96H72 371 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 RPGRIP1Q96KN7 1286 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 TRPV4Q9HBA0 871 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 TTC7AQ9ULT0 858 aaPredicted RBP17.88■□□□□ 0.45
CLN6-202ENST00000538696 TLR6Q9Y2C9 796 aa17.88■□□□□ 0.45
CLN6-202ENST00000538696 TCF20Q9UGU0 1960 aaKnown RBP17.88■□□□□ 0.45
CLN6-202ENST00000538696 LRCH4O75427 683 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 TCF3P15923 654 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 GBP1P32455 592 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 HDAC4P56524 1084 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 SEL1L2Q5TEA6 688 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 TXNRD3NBQ6F5E7 133 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 PLD4Q96BZ4 506 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 KIF9Q9HAQ2 790 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 RBM12Q9NTZ6 932 aaKnown RBP17.87■□□□□ 0.45
CLN6-202ENST00000538696 KLHL11Q9NVR0 708 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 CFAP97Q9P2B7 532 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 NR2E1Q9Y466 385 aa17.87■□□□□ 0.45
CLN6-202ENST00000538696 PRUNE2Q8WUY3 3088 aa17.86■□□□□ 0.45
CLN6-202ENST00000538696 GREM1O60565 184 aa17.86■□□□□ 0.45
CLN6-202ENST00000538696 FGGP02679 453 aa17.86■□□□□ 0.45
CLN6-202ENST00000538696 CXCR3P49682 368 aa17.86■□□□□ 0.45
CLN6-202ENST00000538696 KPNA1P52294 538 aaPredicted RBP17.86■□□□□ 0.45
CLN6-202ENST00000538696 COG7P83436 770 aa17.86■□□□□ 0.45
CLN6-202ENST00000538696 SLC25A11Q02978 314 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms