RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	STT3B	Q8TCJ2	826 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	ZNF398	Q8TD17	642 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	TRAPPC12	Q8WVT3	735 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	AKAP1	Q92667	903 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
CD44-233	ENST00000531141	PRDM8	Q9NQV8	689 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	GRHPR	Q9UBQ7	328 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	C19orf53	Q9UNZ5	99 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-233	ENST00000531141	SCAF8	Q9UPN6	1271 aa	Known RBP	4.36	□□□□□ -1.71
CD44-233	ENST00000531141	CNTN6	Q9UQ52	1028 aa		4.36	□□□□□ -1.71
CD44-233	ENST00000531141	FAM90A18P	A6NE21	464 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	FAM90A16P	A6NEW6	464 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	C3orf70	A6NLC5	250 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	FAM90A9P	A6NNJ1	464 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	EFCAB8	A8MWE9	144 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	FAM90A5P	A8MXJ8	464 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	OVOL3	O00110	214 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	FAM90A15P	P0C7V4	464 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	FAM90A14P	P0C7W9	464 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	TACR3	P29371	465 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	CDK7	P50613	346 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	AP2B1	P63010	937 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	TLE3	Q04726	772 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	SF3A3	Q12874	501 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	ZNF268	Q14587	947 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	KPNB1	Q14974	876 aa	Known RBP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	GLE1	Q53GS7	698 aa	Known RBP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	AWAT1	Q58HT5	328 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	TTC22	Q5TAA0	569 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	KIAA1614	Q5VZ46	1190 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	ANO1	Q5XXA6	986 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	WDR93	Q6P2C0	686 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	C16orf89	Q6UX73	402 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	RANBP10	Q6VN20	620 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	C16orf71	Q8IYS4	520 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	GALNT16	Q8N428	558 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	SPATA5	Q8NB90	893 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	NTN5	Q8WTR8	489 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	ASB12	Q8WXK4	309 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	REXO5	Q96IC2	774 aa	Known RBP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	SENP7	Q9BQF6	1050 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	EFHD1	Q9BUP0	239 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	TMEM120A	Q9BXJ8	343 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	PABPC3	Q9H361	631 aa	Known RBP	4.35	□□□□□ -1.71
CD44-233	ENST00000531141	ARL8B	Q9NVJ2	186 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	VPS4A	Q9UN37	437 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	ZBTB1	Q9Y2K1	713 aa		4.35	□□□□□ -1.71
CD44-233	ENST00000531141	MBD3L5	A6NJ08	208 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-233	ENST00000531141	SLC38A8	A6NNN8	435 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	KIF28P	B7ZC32	967 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	PPP6R2	O75170	966 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	EIF3J	O75822	258 aa	Known RBP	4.34	□□□□□ -1.71
CD44-233	ENST00000531141	ALDOA	P04075	364 aa	Known RBP	4.34	□□□□□ -1.71
CD44-233	ENST00000531141	TUBB4A	P04350	444 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	EPHB2	P29323	1055 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	PNLIPRP1	P54315	467 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	TAS2R50	P59544	299 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	PRKG1	Q13976	671 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	PFKFB3	Q16875	520 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-233	ENST00000531141	ANKRD40	Q6AI12	368 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	SULT6B1	Q6IMI4	303 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	ANO7	Q6IWH7	933 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	DPY19L2P1	Q6NXN4	242 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	RFX8	Q6ZV50	586 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	LAS2	Q8IYD9	372 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	NKAP	Q8N5F7	415 aa	Known RBP	4.34	□□□□□ -1.71
CD44-233	ENST00000531141	MYCT1	Q8N699	235 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	OR1N1	Q8NGS0	311 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	OSR1	Q8TAX0	266 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-233	ENST00000531141	MORC4	Q8TE76	937 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	HMGB4	Q8WW32	186 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	CPT1B	Q92523	772 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	CCT6B	Q92526	530 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	C5orf34	Q96MH7	638 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	PSMD1	Q99460	953 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	FAM118B	Q9BPY3	351 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	NUAK2	Q9H093	628 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	MYLK2	Q9H1R3	596 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	CCDC134	Q9H6E4	229 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	ASNSD1	Q9NWL6	643 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	FRMD4B	Q9Y2L6	1034 aa		4.34	□□□□□ -1.71
CD44-233	ENST00000531141	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-233	ENST00000531141	MASP2	O00187	686 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	PRY	O14603	147 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	NBN	O60934	754 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	CYP2D6	P10635	497 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	GYS1	P13807	737 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	IGFBP2	P18065	325 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	HOXD12	P35452	270 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	VPS41	P49754	854 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	C21orf58	P58505	322 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	SEC23B	Q15437	767 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	TBRG1	Q3YBR2	411 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	KYAT3	Q6YP21	454 aa	Known RBP	4.33	□□□□□ -1.72
CD44-233	ENST00000531141	CCDC117	Q8IWD4	279 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-233	ENST00000531141	ADPRHL1	Q8NDY3	354 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	OTUD7A	Q8TE49	926 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-233	ENST00000531141	MCRS1	Q96EZ8	462 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	P2RY11	Q96G91	374 aa		4.33	□□□□□ -1.72
CD44-233	ENST00000531141	ZNF845	Q96IR2	970 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-233	ENST00000531141	HERPUD2	Q9BSE4	406 aa		4.33	□□□□□ -1.72

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