RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	ELF2	Q15723	593 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	ETFDH	Q16134	617 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553		Q4G0T1	1027 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	PAPD7	Q5XG87	772 aa	Known RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	KYAT3	Q6YP21	454 aa	Known RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	GATAD2A	Q86YP4	633 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	LAS2	Q8IYD9	372 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	ASB12	Q8WXK4	309 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	COQ8B	Q96D53	544 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	SLC39A13	Q96H72	371 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	ZNF845	Q96IR2	970 aa	Predicted RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	FAR2	Q96K12	515 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	FCRL5	Q96RD9	977 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	SIGLEC11	Q96RL6	698 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	GATA5	Q9BWX5	397 aa	Predicted RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	WDR12	Q9GZL7	423 aa	Known RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	AGO4	Q9HCK5	861 aa	Known RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	ASNSD1	Q9NWL6	643 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	NFU1	Q9UMS0	254 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	LRCH1	Q9Y2L9	728 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	HEMK1	Q9Y5R4	338 aa	Predicted RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	SPATA31A5	Q5VU36	1347 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	SPATA31A7	Q8IWB4	1347 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	ABHD14A-ACY1	A0A1B0GW23	586 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	FFAR2	O15552	330 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	MOSPD3	O75425	235 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	PLAU	P00749	431 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	LMO1	P25800	156 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	SLC8A1	P32418	973 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	IDUA	P35475	653 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	VPS41	P49754	854 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	RPS13	P62277	151 aa	Known RBP	5.37	□□□□□ -1.55
CD44-223	ENST00000526553	TNFAIP2	Q03169	654 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	C16orf89	Q6UX73	402 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	TFAP2D	Q7Z6R9	452 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	TRABD2A	Q86V40	505 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	NRSN1	Q8IZ57	195 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	FAM71B	Q8TC56	605 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	SLC22A17	Q8WUG5	538 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	WDR60	Q8WVS4	1066 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	NPIPB3	Q92617	1050 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	PSMD1	Q99460	953 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	PRPF18	Q99633	342 aa	Known RBP	5.37	□□□□□ -1.55
CD44-223	ENST00000526553	TMEM79	Q9BSE2	394 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	TM2D2	Q9BX73	214 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	VPS16	Q9H269	839 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553	TP63	Q9H3D4	680 aa	Predicted RBP	5.37	□□□□□ -1.55
CD44-223	ENST00000526553	EPS8L2	Q9H6S3	715 aa		5.37	□□□□□ -1.55
CD44-223	ENST00000526553		A0A087WV62	115 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	PLEKHD1	A6NEE1	506 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	CNOT3	O75175	753 aa	Known RBP	5.36	□□□□□ -1.55
CD44-223	ENST00000526553	RPS6KB1	P23443	525 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	PTGER1	P34995	402 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	AGTR2	P50052	363 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	ZNF84	P51523	738 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	ID2	Q02363	134 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	DMWD	Q09019	674 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	PTK2B	Q14289	1009 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	SPARCL1	Q14515	664 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	GRM4	Q14833	912 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	BRD3	Q15059	726 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	SLC9C1	Q4G0N8	1177 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	GLE1	Q53GS7	698 aa	Known RBP	5.36	□□□□□ -1.55
CD44-223	ENST00000526553	C10orf25	Q5T742	122 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	PXDC1	Q5TGL8	231 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	RBM44	Q6ZP01	1051 aa	Known RBP	5.36	□□□□□ -1.55
CD44-223	ENST00000526553	RFX6	Q8HWS3	928 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	UEVLD	Q8IX04	471 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	SAMD3	Q8N6K7	520 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	BCAS4	Q8TDM0	211 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	PIGK	Q92643	395 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	RSC1A1	Q92681	617 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	CELF1	Q92879	486 aa	Known RBP	5.36	□□□□□ -1.55
CD44-223	ENST00000526553	ELOVL1	Q9BW60	279 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	TRNAU1AP	Q9NX07	287 aa	Known RBP	5.36	□□□□□ -1.55
CD44-223	ENST00000526553	MAGED2	Q9UNF1	606 aa	Predicted RBP	5.36	□□□□□ -1.55
CD44-223	ENST00000526553	PCDHB7	Q9Y5E2	793 aa		5.36	□□□□□ -1.55
CD44-223	ENST00000526553	LOC105369274	A0A096LPK9	316 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	LOC102723532	A0A0G2JNH3	316 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	AQP12B	A6NM10	295 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	PPEF2	O14830	753 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	NKX2-8	O15522	239 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	ASNA1	O43681	348 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	CD63	P08962	238 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	CTSA	P10619	480 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	STAT6	P42226	847 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	SLC12A2	P55011	1212 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	PGBD2	Q6P3X8	592 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	OR4N4	Q8N0Y3	316 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	ZNF527	Q8NB42	609 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	C16orf52	Q8NHV5	167 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	SCARB1	Q8WTV0	552 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	IGFBPL1	Q8WX77	278 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	MLXIPL	Q9NP71	852 aa		5.35	□□□□□ -1.55
CD44-223	ENST00000526553	ZMYM2	Q9UBW7	1377 aa		5.34	□□□□□ -1.55
CD44-223	ENST00000526553	C2CD4B	A6NLJ0	364 aa		5.34	□□□□□ -1.55
CD44-223	ENST00000526553	ADAM10	O14672	748 aa		5.34	□□□□□ -1.55
CD44-223	ENST00000526553	TLR2	O60603	784 aa		5.34	□□□□□ -1.55
CD44-223	ENST00000526553	SKAP2	O75563	359 aa	Predicted RBP	5.34	□□□□□ -1.55
CD44-223	ENST00000526553	RPP40	O75818	363 aa	Known RBP	5.34	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms