RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 FMNL3Q8IVF7 1028 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 SPACA3Q8IXA5 215 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 XXYLT1Q8NBI6 393 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 FGF11Q92914 225 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 TMEM176AQ96HP8 235 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 PIWIL1Q96J94 861 aaKnown RBP12.2□□□□□ -0.46
SDCBP-211ENST00000523441 TMX3Q96JJ7 454 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 DUSP9Q99956 384 aaKnown RBP12.2□□□□□ -0.46
SDCBP-211ENST00000523441 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.2□□□□□ -0.46
SDCBP-211ENST00000523441 FBXO10Q9UK96 956 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 AGO1Q9UL18 857 aaKnown RBP12.2□□□□□ -0.46
SDCBP-211ENST00000523441 SCML2Q9UQR0 700 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 ATMQ13315 3056 aa12.2□□□□□ -0.46
SDCBP-211ENST00000523441 COL5A1P20908 1838 aaPredicted RBP12.19□□□□□ -0.46
SDCBP-211ENST00000523441 A0A1B0GTQ1 180 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 SLC12A8A0AV02 714 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 FRMD3A2A2Y4 597 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 NPC1O15118 1278 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 ARHGAP6O43182 974 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 TGFB1I1O43294 461 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 RALAP11233 206 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 GLDCP23378 1020 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 ATICP31939 592 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 CHKAP35790 457 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 ZNF132P52740 706 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 ASIC1P78348 528 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 KCNH2Q12809 1159 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 BNIP3Q12983 259 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 NCOA4Q13772 614 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 ENPP2Q13822 863 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 TTC31Q49AM3 519 aaPredicted RBP12.19□□□□□ -0.46
SDCBP-211ENST00000523441 CLEC20AQ6ZU45 233 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 RSRC2Q7L4I2 434 aaKnown RBP12.19□□□□□ -0.46
SDCBP-211ENST00000523441 SCD5Q86SK9 330 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 ELF4Q99607 663 aaPredicted RBP12.19□□□□□ -0.46
SDCBP-211ENST00000523441 SEMA4CQ9C0C4 833 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 CLMPQ9H6B4 373 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 PLA2G4CQ9UP65 541 aa12.19□□□□□ -0.46
SDCBP-211ENST00000523441 WNT9AO14904 365 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 EXOC3O60645 756 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 WNT1P04628 370 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 FAM163BP0C2L3 166 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 CD58P19256 250 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 ACTN2P35609 894 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 ACADVLP49748 655 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 CAMK2GQ13555 558 aaPredicted RBP12.18□□□□□ -0.46
SDCBP-211ENST00000523441 KIAA0895LQ68EN5 471 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 BRAPQ7Z569 592 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 PLEKHO2Q8TD55 490 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 CYFIP2Q96F07 1278 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 GZF1Q9H116 711 aaPredicted RBP12.18□□□□□ -0.46
SDCBP-211ENST00000523441 PCED1AQ9H1Q7 454 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 PRSS16Q9NQE7 514 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 ABCB8Q9NUT2 735 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 NCKAP1Q9Y2A7 1128 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 ZNF510Q9Y2H8 683 aa12.18□□□□□ -0.46
SDCBP-211ENST00000523441 SRPRBQ9Y5M8 271 aaKnown RBP12.18□□□□□ -0.46
SDCBP-211ENST00000523441 LRRIQ3A6PVS8 624 aaPredicted RBP12.17□□□□□ -0.46
SDCBP-211ENST00000523441 HHLA1C9JL84 531 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 SLC28A2O43868 658 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 EIF5BO60841 1220 aaKnown RBP12.17□□□□□ -0.46
SDCBP-211ENST00000523441 SDC3O75056 442 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 CD2BP2O95400 341 aaKnown RBP12.17□□□□□ -0.46
SDCBP-211ENST00000523441 VNN1O95497 513 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 STAU1O95793 577 aaKnown RBP12.17□□□□□ -0.46
SDCBP-211ENST00000523441 IGHV4-34P06331 123 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 CASP1P29466 404 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 NUMBP49757 651 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 COG7P83436 770 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 KCNC4Q03721 635 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 EIF4HQ15056 248 aaKnown RBP12.17□□□□□ -0.46
SDCBP-211ENST00000523441 SHBQ15464 509 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 FAM26FQ5R3K3 315 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 FBXL19Q6PCT2 694 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 NCEH1Q6PIU2 408 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 PRICKLE2Q7Z3G6 844 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 TADA2BQ86TJ2 420 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 DHX40Q8IX18 779 aaKnown RBP12.17□□□□□ -0.46
SDCBP-211ENST00000523441 SNIP1Q8TAD8 396 aaKnown RBP12.17□□□□□ -0.46
SDCBP-211ENST00000523441 TWNKQ96RR1 684 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 DCLK3Q9C098 648 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 NRSN2Q9GZP1 204 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 EBF2Q9HAK2 575 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 CSNK1G1Q9HCP0 422 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 FBXL12Q9NXK8 326 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 MARCH2Q9P0N8 246 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 SERGEFQ9UGK8 458 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 CLCA2Q9UQC9 943 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 PCDHGA1Q9Y5H4 931 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 PCDHA5Q9Y5H7 936 aa12.17□□□□□ -0.46
SDCBP-211ENST00000523441 TDRD6O60522 2096 aaKnown RBP12.17□□□□□ -0.46
SDCBP-211ENST00000523441 A0A1W2PP55 124 aa12.16□□□□□ -0.46
SDCBP-211ENST00000523441 ERVH48-1M5A8F1 160 aa12.16□□□□□ -0.46
SDCBP-211ENST00000523441 VILLO15195 856 aa12.16□□□□□ -0.46
SDCBP-211ENST00000523441 RNASEH2AO75792 299 aaKnown RBP12.16□□□□□ -0.46
SDCBP-211ENST00000523441 MPOP05164 745 aa12.16□□□□□ -0.46
SDCBP-211ENST00000523441 P4HA1P13674 534 aa12.16□□□□□ -0.46
SDCBP-211ENST00000523441 CD38P28907 300 aa12.16□□□□□ -0.46
SDCBP-211ENST00000523441 HLA-FP30511 346 aa12.16□□□□□ -0.46
SDCBP-211ENST00000523441 RACK1P63244 317 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms