RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-222	ENST00000520948	FAM170A	A1A519	330 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	GDF9	O60383	454 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	RTN2	O75298	545 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	FAM228B	P0C875	321 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	PXN	P49023	591 aa	Predicted RBP	18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	EFEMP1	Q12805	493 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	EIF4EBP2	Q13542	120 aa	Predicted RBP	18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	ITPRIPL2	Q3MIP1	535 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	PPP1R2P3	Q6NXS1	205 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	PKN3	Q6P5Z2	889 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	ARC	Q7LC44	396 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	DDX42	Q86XP3	938 aa	Known RBP eCLIP	18.92	■□□□□ 0.62	5e-7	■■■■□ 19.9
VEGFA-222	ENST00000520948	FAM160A2	Q8N612	972 aa	Predicted RBP	18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	NETO1	Q8TDF5	533 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	GOLGA1	Q92805	767 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	FAM149B1	Q96BN6	582 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	FAM83C	Q9BQN1	747 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	C11orf70	Q9BRQ4	267 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	TRIM62	Q9BVG3	475 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	GRPEL1	Q9HAV7	217 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	THG1L	Q9NWX6	298 aa	Known RBP	18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	SMPD4	Q9NXE4	827 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	MARCH2	Q9P0N8	246 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	WDR35	Q9P2L0	1181 aa		18.92	■□□□□ 0.62
VEGFA-222	ENST00000520948	GOLGA6L3	A6NEY3	463 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	HSF2BP	O75031	334 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	LRP3	O75074	770 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	CALB1	P05937	261 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	NCAM1	P13591	858 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	CNR2	P34972	360 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	EIF4A3	P38919	411 aa	Known RBP	18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	COG7	P83436	770 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	CSRP2	Q16527	193 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	TSR1	Q2NL82	804 aa	Known RBP	18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	TRIM68	Q6AZZ1	485 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	HTR3D	Q70Z44	454 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	RSRC2	Q7L4I2	434 aa	Known RBP	18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	DEFB106A	Q8N104	65 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	RNF139	Q8WU17	664 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	ZNHIT6	Q9NWK9	470 aa	Known RBP	18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	IMPACT	Q9P2X3	320 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	SFMBT1	Q9UHJ3	866 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	STRIP2	Q9ULQ0	834 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	ATG2B	Q96BY7	2078 aa		18.91	■□□□□ 0.62
VEGFA-222	ENST00000520948	E2F8	A0AVK6	867 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	SLC30A4	O14863	429 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	DAB1	O75553	588 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	GRAP2	O75791	330 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	STC2	O76061	302 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	IGLV3-25	P01717	112 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	FTL	P02792	175 aa	Predicted RBP	18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	KCNA4	P22459	653 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	FECH	P22830	423 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	NOS2	P35228	1153 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	MTF1	Q14872	753 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	PPM1J	Q5JR12	505 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	DQX1	Q8TE96	717 aa	Known RBP	18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	NT5C3B	Q969T7	300 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	NACA2	Q9H009	215 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	EBF3	Q9H4W6	596 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	HPS4	Q9NQG7	708 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	CFAP97	Q9P2B7	532 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	RASAL2	Q9UJF2	1139 aa		18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	HBS1L	Q9Y450	684 aa	Known RBP	18.9	■□□□□ 0.62
VEGFA-222	ENST00000520948	OTOL1	A6NHN0	477 aa	Predicted RBP	18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	TMCO5B	A8MYB1	307 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	IGLV3-27	P01718	113 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	MATK	P42679	507 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	PITX1	P78337	314 aa	Predicted RBP	18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	NNT	Q13423	1086 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	TRIP4	Q15650	581 aa	Predicted RBP	18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	CCDC6	Q16204	474 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	DCAF6	Q58WW2	860 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	PPP1R15B	Q5SWA1	713 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	FAM102A	Q5T9C2	384 aa	Predicted RBP	18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	FSTL4	Q6MZW2	842 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	TRNP1	Q6NT89	227 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948		Q6ZNB5	142 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	VPS36	Q86VN1	386 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	WDR5B	Q86VZ2	330 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	DNAAF5	Q86Y56	855 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	MIB1	Q86YT6	1006 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	SYNPO	Q8N3V7	929 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	C3orf20	Q8ND61	904 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	OSCP1	Q8WVF1	389 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	CHFR	Q96EP1	664 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	PANX2	Q96RD6	677 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	LINC00597	Q9H2U6	94 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	POLR3B	Q9NW08	1133 aa	Predicted RBP	18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	EML5	Q05BV3	1969 aa		18.89	■□□□□ 0.61
VEGFA-222	ENST00000520948	SLC12A8	A0AV02	714 aa		18.88	■□□□□ 0.61
VEGFA-222	ENST00000520948	SIGLEC16	A6NMB1	481 aa		18.88	■□□□□ 0.61
VEGFA-222	ENST00000520948	GOLGA8S	H3BPF8	625 aa		18.88	■□□□□ 0.61
VEGFA-222	ENST00000520948	CAPN9	O14815	690 aa		18.88	■□□□□ 0.61
VEGFA-222	ENST00000520948	AXIN1	O15169	862 aa		18.88	■□□□□ 0.61
VEGFA-222	ENST00000520948	KRT37	O76014	449 aa		18.88	■□□□□ 0.61
VEGFA-222	ENST00000520948	KLKB1	P03952	638 aa		18.88	■□□□□ 0.61
VEGFA-222	ENST00000520948	ADRB1	P08588	477 aa		18.88	■□□□□ 0.61
VEGFA-222	ENST00000520948	ARSA	P15289	507 aa		18.88	■□□□□ 0.61

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