RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 LRRC8BQ6P9F7 803 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 CNKSR3Q6P9H4 555 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TPGS1Q6ZTW0 290 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 NT5DC3Q86UY8 548 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZNF614Q8N883 585 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZNF555Q8NEP9 628 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZNF507Q8TCN5 953 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 BTN2A2Q8WVV5 523 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 USP7Q93009 1102 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ERGIC2Q96RQ1 377 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 RBM15Q96T37 977 aaKnown RBP eCLIP4.36□□□□□ -1.71
VCAN-209ENST00000513016 CBWD1Q9BRT8 395 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ROPN1BQ9BZX4 212 aaPredicted RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZDHHC6Q9H6R6 413 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ROPN1Q9HAT0 212 aaPredicted RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZFP14Q9HCL3 533 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 MIEF1Q9NQG6 463 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 LRRC4BQ9NT99 713 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 FAM153AQ9UHL3 310 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TMCC3Q9ULS5 477 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TDRKHQ9Y2W6 561 aaKnown RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 Q9Y3F1 56 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 GPSM3Q9Y4H4 160 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ASB3Q9Y575 518 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TMEM114B3SHH9 223 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 SLCO1B7G3V0H7 640 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZNF500O60304 480 aaPredicted RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 TBL1XO60907 577 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 CCL5P13501 91 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 BTNL9Q6UXG8 535 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 OTOP2Q7RTS6 562 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 MAP4K3Q8IVH8 894 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 SLC22A9Q8IVM8 553 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZNF513Q8N8E2 541 aaPredicted RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 DTX3LQ8TDB6 740 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 DIS3LQ8TF46 1054 aaKnown RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 TRAPPC12Q8WVT3 735 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 FAM162AQ96A26 154 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ULBP1Q9BZM6 244 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TRABDQ9H4I3 376 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ELOVL6Q9H5J4 265 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ADGRA2Q96PE1 1338 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZNF541Q9H0D2 1346 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 PIPSLA2A3N6 862 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZNF862O60290 1169 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 MICAL2O94851 1124 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 MMP3P08254 477 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 MMEP08473 750 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ITGA8P53708 1063 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 PRKAA2P54646 552 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ZNF280AP59817 542 aaPredicted RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 SLC6A3Q01959 620 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 GRAMD1BQ3KR37 738 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 CRY2Q49AN0 593 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TMEM164Q5U3C3 297 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 DOK6Q6PKX4 331 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 C16orf89Q6UX73 402 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 LBX2Q6XYB7 198 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TSHZ1Q6ZSZ6 1077 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 SV2AQ7L0J3 742 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TRAPPC5Q8IUR0 188 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 NLGN2Q8NFZ4 835 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 WFIKKN2Q8TEU8 576 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 DACH2Q96NX9 599 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 VTI1BQ9UEU0 232 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 DCDC2Q9UHG0 476 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ERVW-1Q9UQF0 538 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ADGRG1Q9Y653 693 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ALG6Q9Y672 507 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 CCDC195A0A1B0GUA6 201 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 FAM205CA6NFA0 338 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 SYN3O14994 580 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 IL1BP01584 269 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TPBGLP0DKB5 382 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 KITP10721 976 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 RRM2P31350 389 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 BLVRAP53004 296 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 NAA20P61599 178 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 OCA2Q04671 838 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 GAD2Q05329 585 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ELP6Q0PNE2 266 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TFDP3Q5H9I0 405 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 DENND1BQ6P3S1 775 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 FOXR1Q6PIV2 292 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 OTOAQ7RTW8 1153 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 HORMAD1Q86X24 394 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 TDRD5Q8NAT2 981 aaKnown RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 B4GALNT2Q8NHY0 566 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 EDEM1Q92611 657 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 RERGQ96A58 199 aaPredicted RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 C17orf80Q9BSJ5 609 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 MLPHQ9BV36 600 aaPredicted RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 OSBPL1AQ9BXW6 950 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 OSBPL6Q9BZF3 934 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ACTR8Q9H981 624 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ENTPD4Q9Y227 616 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 MRPS33Q9Y291 106 aaKnown RBP4.36□□□□□ -1.71
VCAN-209ENST00000513016 PCDHA2Q9Y5H9 948 aa4.36□□□□□ -1.71
VCAN-209ENST00000513016 ARVCFO00192 962 aa4.35□□□□□ -1.71
VCAN-209ENST00000513016 KATNA1O75449 491 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms