RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 PROKR1Q8TCW9 393 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 THAP3Q8WTV1 239 aaPredicted RBP5.02□□□□□ -1.61
NUP54-206ENST00000508465 NLRP4Q96MN2 994 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 GPHA2Q96T91 129 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 PLIN2Q99541 437 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 GCOM2Q9BZD3 368 aaPredicted RBP5.02□□□□□ -1.61
NUP54-206ENST00000508465 MINDY3Q9H8M7 445 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 ALG13Q9NP73 1137 aaKnown RBP5.02□□□□□ -1.61
NUP54-206ENST00000508465 RGS18Q9NS28 235 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 TRPS1Q9UHF7 1281 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 PCDHB7Q9Y5E2 793 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 MRPL42Q9Y6G3 142 aaKnown RBP5.02□□□□□ -1.61
NUP54-206ENST00000508465 SQORQ9Y6N5 450 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 GBF1Q92538 1859 aa5.02□□□□□ -1.61
NUP54-206ENST00000508465 MYH9P35579 1960 aaKnown RBP5.02□□□□□ -1.61
NUP54-206ENST00000508465 KDM3AQ9Y4C1 1321 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 C2orf78A6NCI8 922 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 GRM6O15303 877 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 DKC1O60832 514 aaKnown RBP eCLIP5.01□□□□□ -1.61
NUP54-206ENST00000508465 HIP1RO75146 1068 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 CRTAMO95727 393 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 OR52Z1P0C646 297 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 ZSCAN20P17040 1043 aaPredicted RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 DNAJB1P25685 340 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 CD38P28907 300 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 CTNNB1P35222 781 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 BMPR1AP36894 532 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 CCT6AP40227 531 aaKnown RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 PBX3P40426 434 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 MCM2P49736 904 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 CUL4AQ13619 759 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 EMC2Q15006 297 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 SPOUT1Q5T280 376 aaKnown RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 FAM173BQ6P4H8 233 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 LRRC55Q6ZSA7 311 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 SLC24A5Q71RS6 500 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 RHOUQ7L0Q8 258 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 CATSPER4Q7RTX7 472 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 PRIMA1Q86XR5 153 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 ECHDC2Q86YB7 292 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 CISD2Q8N5K1 135 aaKnown RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 PSPC1Q8WXF1 523 aaKnown RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 ERCC4Q92889 916 aaPredicted RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 E2F7Q96AV8 911 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 ARL8AQ96BM9 186 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 ZNF689Q96CS4 500 aaPredicted RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 CPB2Q96IY4 423 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 FTHL17Q9BXU8 183 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 TRIM55Q9BYV6 548 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 DHX33Q9H6R0 707 aaKnown RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 ATP6V0A4Q9HBG4 840 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 IFT122Q9HBG6 1241 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 XPNPEP1Q9NQW7 623 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 ANKEF1Q9NU02 776 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 TYW1Q9NV66 732 aaKnown RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 LRWD1Q9UFC0 647 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 NOL7Q9UMY1 257 aaKnown RBP5.01□□□□□ -1.61
NUP54-206ENST00000508465 COL4A3BPQ9Y5P4 624 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 PTPRSQ13332 1948 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 LOXHD1Q8IVV2 1947 aa5.01□□□□□ -1.61
NUP54-206ENST00000508465 TANC1Q9C0D5 1861 aa5□□□□□ -1.61
NUP54-206ENST00000508465 PRRC2BQ5JSZ5 2229 aaKnown RBP5□□□□□ -1.61
NUP54-206ENST00000508465 TRIOO75962 3097 aa5□□□□□ -1.61
NUP54-206ENST00000508465 SLC12A8A0AV02 714 aa5□□□□□ -1.61
NUP54-206ENST00000508465 VPS37CA5D8V6 355 aaPredicted RBP5□□□□□ -1.61
NUP54-206ENST00000508465 NT5C1B-RDH14C9J2C7 533 aa5□□□□□ -1.61
NUP54-206ENST00000508465 H3BNC9 293 aa5□□□□□ -1.61
NUP54-206ENST00000508465 B3GALT2O43825 422 aa5□□□□□ -1.61
NUP54-206ENST00000508465 USO1O60763 962 aaKnown RBP5□□□□□ -1.61
NUP54-206ENST00000508465 RPLP2P05387 115 aaKnown RBP5□□□□□ -1.61
NUP54-206ENST00000508465 LINC00271P0C7V0 271 aa5□□□□□ -1.61
NUP54-206ENST00000508465 STAG3L1P0CL83 205 aa5□□□□□ -1.61
NUP54-206ENST00000508465 POU3F3P20264 500 aaPredicted RBP5□□□□□ -1.61
NUP54-206ENST00000508465 RPA1P27694 616 aa5□□□□□ -1.61
NUP54-206ENST00000508465 HOXA11P31270 313 aaPredicted RBP5□□□□□ -1.61
NUP54-206ENST00000508465 GTF2F1P35269 517 aaKnown RBP eCLIP5□□□□□ -1.61
NUP54-206ENST00000508465 ARL2P36404 184 aa5□□□□□ -1.61
NUP54-206ENST00000508465 TRAPPC10P48553 1259 aa5□□□□□ -1.61
NUP54-206ENST00000508465 RARRES1P49788 294 aa5□□□□□ -1.61
NUP54-206ENST00000508465 C21orf58P58505 322 aa5□□□□□ -1.61
NUP54-206ENST00000508465 ALDH6A1Q02252 535 aaKnown RBP5□□□□□ -1.61
NUP54-206ENST00000508465 CEBPZQ03701 1054 aaKnown RBP5□□□□□ -1.61
NUP54-206ENST00000508465 RAB33AQ14088 237 aa5□□□□□ -1.61
NUP54-206ENST00000508465 PDIA5Q14554 519 aa5□□□□□ -1.61
NUP54-206ENST00000508465 TCEAL5Q5H9L2 206 aa5□□□□□ -1.61
NUP54-206ENST00000508465 FAM209AQ5JX71 171 aa5□□□□□ -1.61
NUP54-206ENST00000508465 CLLU1OSQ5K130 101 aa5□□□□□ -1.61
NUP54-206ENST00000508465 ODR4Q5SWX8 454 aa5□□□□□ -1.61
NUP54-206ENST00000508465 TWF2Q6IBS0 349 aaKnown RBP5□□□□□ -1.61
NUP54-206ENST00000508465 KCNK18Q7Z418 384 aa5□□□□□ -1.61
NUP54-206ENST00000508465 CDR2LQ86X02 465 aaPredicted RBP5□□□□□ -1.61
NUP54-206ENST00000508465 RNF149Q8NC42 400 aa5□□□□□ -1.61
NUP54-206ENST00000508465 SPPL3Q8TCT6 385 aa5□□□□□ -1.61
NUP54-206ENST00000508465 DLG3Q92796 817 aa5□□□□□ -1.61
NUP54-206ENST00000508465 CCDC43Q96MW1 224 aaKnown RBP5□□□□□ -1.61
NUP54-206ENST00000508465 CASD1Q96PB1 797 aa5□□□□□ -1.61
NUP54-206ENST00000508465 JPH2Q9BR39 696 aaPredicted RBP5□□□□□ -1.61
NUP54-206ENST00000508465 MMTAG2Q9BU76 263 aaKnown RBP5□□□□□ -1.61
NUP54-206ENST00000508465 POLR3CQ9BUI4 534 aaPredicted RBP5□□□□□ -1.61
NUP54-206ENST00000508465 POLR3FQ9H1D9 316 aaPredicted RBP5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms