RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 C11orf63Q6NUN7 778 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 MTSS1LQ765P7 747 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 CACUL1Q86Y37 369 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 MCOLN2Q8IZK6 566 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 FAM9CQ8IZT9 166 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 INPP5DQ92835 1189 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 TBCBQ99426 244 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 DCLK3Q9C098 648 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 FAM47E-STBD1D6RA91 191 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 PGK1P00558 417 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 HSPA13P48723 471 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 SLC16A1P53985 500 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 ALDH6A1Q02252 535 aaKnown RBP13.48□□□□□ -0.25
PTPRF-215ENST00000496447 CSHL1Q14406 222 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 TMCO5AQ8N6Q1 288 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 CASKIN2Q8WXE0 1202 aa13.48□□□□□ -0.25
PTPRF-215ENST00000496447 A0A0A6YYK5 440 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CCDC130P13994 396 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 HSD17B3P37058 310 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 SCNN1GP51170 649 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ITGA9Q13797 1035 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 PGS1Q32NB8 556 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ADAM32Q8TC27 787 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 FAM192AQ9GZU8 254 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CTNNAL1Q9UBT7 734 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ACOT9Q9Y305 439 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 PSMD12O00232 456 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 O00370 1275 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 STAU1O95793 577 aaKnown RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 PAEPP09466 180 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 SERPINB1P30740 379 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 MLH1P40692 756 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 MPP3Q13368 585 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 POU6F1Q14863 301 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CYP51A1Q16850 503 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 TMEM159Q96B96 161 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ZBTB45Q96K62 511 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CAMKK2Q96RR4 588 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 KRCC1Q9NPI7 259 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 GSNP06396 782 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CYP2A6P11509 494 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CDH8P55286 799 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 TMEM119Q4V9L6 283 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ARHGEF19Q8IW93 802 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 SCUBE3Q8IX30 993 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 DEFB106AQ8N104 65 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 COPS5Q92905 334 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ELOVL6Q9H5J4 265 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 DCLRE1BQ9H816 532 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 APPL1Q9UKG1 709 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ARHGAP23Q9P227 1491 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ZW10O43264 779 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 POLR2EP19388 210 aaKnown RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 NOGQ13253 232 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 TRIM16LQ309B1 348 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 PABPC1LQ4VXU2 614 aaKnown RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CCDC149Q6ZUS6 474 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 C16orf59Q7L2K0 433 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ELMO3Q96BJ8 720 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 SENP8Q96LD8 212 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 RPS6KB2Q9UBS0 482 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 NDUFB5O43674 189 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CYTH3O43739 400 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 SMIM10L2AP0DMW4 78 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 SMIM10L2BP0DMW5 78 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 ITGB6P18564 788 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 PTPN3P26045 913 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 MRPS6P82932 125 aaKnown RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 MAP2K5Q13163 448 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CCNG2Q16589 344 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 IRAK1BP1Q5VVH5 260 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 KIAA0895Q8NCT3 520 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 VPS50Q96JG6 964 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 PNMA5Q96PV4 448 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 CEP41Q9BYV8 373 aa13.47□□□□□ -0.25
PTPRF-215ENST00000496447 PABPC3Q9H361 631 aaKnown RBP13.47□□□□□ -0.25
PTPRF-215ENST00000496447 USP17L7P0C7H9 530 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 NUDT2P50583 147 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 GCNT1Q02742 428 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 DNAJC3Q13217 504 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CBWD3Q5JTY5 395 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CBWD5Q5RIA9 395 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 P3H2Q8IVL5 708 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 LZTR1Q8N653 840 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 SERAC1Q96JX3 654 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CNDP1Q96KN2 507 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 ACTR8Q9H981 624 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CYP39A1Q9NYL5 469 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 EML1O00423 815 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 KPNA3O00505 521 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CYP2A7P20853 494 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CNTFP26441 200 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 COPAP53621 1224 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 ROR2Q01974 943 aaKnown RBP13.46□□□□□ -0.25
PTPRF-215ENST00000496447 GJC2Q5T442 439 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-215ENST00000496447 DEPDC1Q5TB30 811 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 ARMCX6Q7L4S7 300 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 GPR142Q7Z601 462 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 MAP4K3Q8IVH8 894 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 B3GALNT2Q8NCR0 500 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms