RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 DHX35Q9H5Z1 703 aaKnown RBP20.11■□□□□ 0.81
USP39-218ENST00000493829 CFAP97Q9P2B7 532 aa20.11■□□□□ 0.81
USP39-218ENST00000493829 FZD10Q9ULW2 581 aa20.11■□□□□ 0.81
USP39-218ENST00000493829 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.11■□□□□ 0.81
USP39-218ENST00000493829 USP15Q9Y4E8 981 aaPredicted RBP20.11■□□□□ 0.81
USP39-218ENST00000493829 PCDHA3Q9Y5H8 950 aa20.11■□□□□ 0.81
USP39-218ENST00000493829 DENND4AQ7Z401 1863 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 CCDC66A2RUB6 948 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 LRRD1A4D1F6 860 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 KCNK3O14649 394 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 STC2O76061 302 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 IGLV3-27P01718 113 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 SLC7A9P82251 487 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 NNTQ13423 1086 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 PPP6R3Q5H9R7 873 aaPredicted RBP20.1■□□□□ 0.81
USP39-218ENST00000493829 EFHC2Q5JST6 749 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 DCAF12L1Q5VU92 463 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 AADACL2Q6P093 401 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 CCDC50Q8IVM0 306 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 NCAPGQ9BPX3 1015 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 ARHGEF38Q9NXL2 777 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 CORO1AP31146 461 aaKnown RBP20.1■□□□□ 0.81
USP39-218ENST00000493829 ADRA1BP35368 520 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 KPNA1P52294 538 aaPredicted RBP20.1■□□□□ 0.81
USP39-218ENST00000493829 COG7P83436 770 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 KRT81Q14533 505 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 PPP2R5DQ14738 602 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 ARL13BQ3SXY8 428 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 ODF2Q5BJF6 829 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 BRMS1LQ5PSV4 323 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 ERMARDQ5T6L9 678 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 POLNQ7Z5Q5 900 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 DENND1CQ8IV53 801 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 ADAMTS19Q8TE59 1207 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 USP13Q92995 863 aaPredicted RBP20.1■□□□□ 0.81
USP39-218ENST00000493829 RNF25Q96BH1 459 aaPredicted RBP20.1■□□□□ 0.81
USP39-218ENST00000493829 PLD4Q96BZ4 506 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 SIK2Q9H0K1 926 aa20.1■□□□□ 0.81
USP39-218ENST00000493829 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.1■□□□□ 0.81
USP39-218ENST00000493829 C5orf42Q9H799 3197 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 KIF2AO00139 706 aaPredicted RBP20.09■□□□□ 0.81
USP39-218ENST00000493829 LEFTY2O00292 366 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 SRGAP2O75044 1071 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 PAGE1O75459 146 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 CD48P09326 243 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 GBP2P32456 591 aaPredicted RBP20.09■□□□□ 0.81
USP39-218ENST00000493829 MTHFRP42898 656 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 PEX5P50542 639 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 RWDD2BP57060 319 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 DNTTIP2Q5QJE6 756 aaKnown RBP20.09■□□□□ 0.81
USP39-218ENST00000493829 LRRC38Q5VT99 294 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 NUGGCQ68CJ6 796 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 ARID3BQ8IVW6 561 aaPredicted RBP20.09■□□□□ 0.81
USP39-218ENST00000493829 KCTD6Q8NC69 237 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 SH3RF2Q8TEC5 729 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 RAPGEF5Q92565 580 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 NTAN1Q96AB6 310 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 KCTD15Q96SI1 283 aaPredicted RBP20.09■□□□□ 0.81
USP39-218ENST00000493829 ARHGAP26Q9UNA1 814 aa20.09■□□□□ 0.81
USP39-218ENST00000493829 NUP210Q8TEM1 1887 aaPredicted RBP20.08■□□□□ 0.81
USP39-218ENST00000493829 KCNU1A8MYU2 1149 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 SLC2A3P11169 496 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 HARS2P49590 506 aaKnown RBP20.08■□□□□ 0.81
USP39-218ENST00000493829 CDH6P55285 790 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 RING1Q06587 406 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 BOLA3Q53S33 107 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 KATNAL2Q8IYT4 538 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 ATP6V0D2Q8N8Y2 350 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 RIN3Q8TB24 985 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 TEKT4Q8WW24 435 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 MYADMQ96S97 322 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 CALN1Q9BXU9 219 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 TDP1Q9NUW8 608 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 DDX56Q9NY93 547 aaKnown RBP20.08■□□□□ 0.81
USP39-218ENST00000493829 SNX12Q9UMY4 172 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 SH3BP1Q9Y3L3 701 aa20.08■□□□□ 0.81
USP39-218ENST00000493829 GOLGA6L7A0A1B0GV03 622 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 GRXCR2A6NFK2 248 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 FAM72CH0Y354 149 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 CREB3O43889 395 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 KLKB1P03952 638 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 PFKLP17858 780 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 FAM78AQ5JUQ0 283 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 FAM72AQ5TYM5 149 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 PIK3R6Q5UE93 754 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 RAP1GAP2Q684P5 730 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 FAM72DQ6L9T8 149 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 FAM72BQ86X60 149 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 OSBPL9Q96SU4 736 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 CDH7Q9ULB5 785 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 HS3ST4Q9Y661 456 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 BRWD1Q9NSI6 2320 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 ZNF185O15231 689 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 PYGMP11217 842 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 VIPR2P41587 438 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 SCAPQ12770 1279 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 MMRN1Q13201 1228 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 ANKS1BQ7Z6G8 1248 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 UNC45BQ8IWX7 931 aa20.07■□□□□ 0.8
USP39-218ENST00000493829 COG1Q8WTW3 980 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms