RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, human

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-223	ENST00000493695	SLC25A32	Q9H2D1	315 aa		4.89	□□□□□ -1.63
SMC4-223	ENST00000493695	HIF1AN	Q9NWT6	349 aa		4.89	□□□□□ -1.63
SMC4-223	ENST00000493695	SLC8A2	Q9UPR5	921 aa		4.89	□□□□□ -1.63
SMC4-223	ENST00000493695	EID1	Q9Y6B2	187 aa		4.89	□□□□□ -1.63
SMC4-223	ENST00000493695	GRID2	O43424	1007 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	IL1R1	P14778	569 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	PBX1	P40424	430 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	RAB27A	P51159	221 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	DGKQ	P52824	942 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	RPL36A	P83881	106 aa	Known RBP	4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	FMO1	Q01740	532 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	LIPM	Q5VYY2	423 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	EPM2AIP1	Q7L775	607 aa	Predicted RBP	4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	FOXP4	Q8IVH2	680 aa	Predicted RBP	4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	TMEM174	Q8WUU8	243 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	NR4A3	Q92570	626 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	MSI2	Q96DH6	328 aa	Known RBP	4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	LRRC27	Q9C0I9	530 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	CDH19	Q9H159	772 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	PLSCR4	Q9NRQ2	329 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	COL20A1	Q9P218	1284 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	SEMA5B	Q9P283	1151 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	MYO6	Q9UM54	1294 aa		4.88	□□□□□ -1.63
SMC4-223	ENST00000493695	KIR2DS5	A0A0G2JLQ3	304 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695		A6NNC1	897 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	KIR2DS3	K7RE56	304 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	PRY	O14603	147 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	RFPL1	O75677	317 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	AKR1A1	P14550	325 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	DUSP1	P28562	367 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	HOXD12	P35452	270 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	IZUMO4	Q1ZYL8	232 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	ANXA2R	Q3ZCQ2	193 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	DGKK	Q5KSL6	1271 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	PRAMEF19	Q5SWL8	479 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	C9orf50	Q5SZB4	431 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	NADSYN1	Q6IA69	706 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	HMBOX1	Q6NT76	420 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	ARL14EP	Q8N8R7	260 aa	Predicted RBP	4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	JDP2	Q8WYK2	163 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	RTFDC1	Q9BY42	306 aa	Predicted RBP	4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	TMEM60	Q9H2L4	133 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	VPS51	Q9UID3	782 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	NOB1	Q9ULX3	412 aa	Known RBP	4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	ICAM5	Q9UMF0	924 aa		4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	4.87	□□□□□ -1.63
SMC4-223	ENST00000493695	PARN	O95453	639 aa	Known RBP	4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	NDUFS1	P28331	727 aa		4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	IGHMBP2	P38935	993 aa	Known RBP	4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	GAB1	Q13480	694 aa		4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	ELF2	Q15723	593 aa		4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	AASDH	Q4L235	1098 aa	Predicted RBP	4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	MORC1	Q86VD1	984 aa		4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	ZDHHC12	Q96GR4	267 aa		4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	PIMREG	Q9BSJ6	248 aa		4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	ELOVL1	Q9BW60	279 aa		4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	RNF26	Q9BY78	433 aa	Predicted RBP	4.86	□□□□□ -1.63
SMC4-223	ENST00000493695	FAM204A	Q9H8W3	233 aa		4.86	□□□□□ -1.63
SMC4-223	ENST00000493695		A0A0G2JK05	382 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	LINC01565	O15544	149 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	ATG13	O75143	517 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	ENO1	P06733	434 aa	Known RBP	4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	HTR7	P34969	479 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	CACNB3	P54284	484 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	GAS1	P54826	345 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	KEAP1	Q14145	624 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	P3H1	Q32P28	736 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	ARHGAP29	Q52LW3	1261 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	GLE1	Q53GS7	698 aa	Known RBP	4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	PIK3CD-AS1	Q5SR53	167 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	CCDC149	Q6ZUS6	474 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	RNF44	Q7L0R7	432 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	TRIL	Q7L0X0	811 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	KRT28	Q7Z3Y7	464 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	CUZD1	Q86UP6	607 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	RHPN2	Q8IUC4	686 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	EIF3C	Q99613	913 aa	Known RBP	4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	SEZ6L	Q9BYH1	1024 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	ZIM2	Q9NZV7	527 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	L1RE1	Q9UN81	338 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	EMSY	Q7Z589	1322 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	COL15A1	P39059	1388 aa		4.85	□□□□□ -1.63
SMC4-223	ENST00000493695	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	RHOD	O00212	210 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	SPTLC2	O15270	562 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	MGEA5	O60502	916 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	CPA1	P15085	419 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	SLC8A1	P32418	973 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	SOX2	P48431	317 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	EGR4	Q05215	589 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	GPS1	Q13098	491 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	MTAP	Q13126	283 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	ACOX1	Q15067	660 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	PGM5	Q15124	567 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	RNF220	Q5VTB9	566 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	RRAGB	Q5VZM2	374 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	NXN	Q6DKJ4	435 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	ZNF329	Q86UD4	541 aa		4.84	□□□□□ -1.63
SMC4-223	ENST00000493695	SESTD1	Q86VW0	696 aa		4.84	□□□□□ -1.63

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