RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 GLMPQ8WWB7 406 aa5.56□□□□□ -1.52
HMGB1P38-201ENST00000490557 PAAF1Q9BRP4 392 aa5.56□□□□□ -1.52
HMGB1P38-201ENST00000490557 MAGEH1Q9H213 219 aa5.56□□□□□ -1.52
HMGB1P38-201ENST00000490557 CDCP1Q9H5V8 836 aa5.56□□□□□ -1.52
HMGB1P38-201ENST00000490557 ELAC1Q9H777 363 aaKnown RBP5.56□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3DA0A087WVF3 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3IA0A087WXS9 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3EA0A087X179 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3KA0A087X1G2 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 GXYLT2A0PJZ3 443 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3BA6NDS4 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3FA6NER0 549 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3LB9A6J9 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 IFRD1O00458 451 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 DSCR3O14972 297 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 DHHO43323 396 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 NBNO60934 754 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 RBMXL2O75526 392 aaKnown RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 MBPP02686 304 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3HP0C7X1 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 GRK5P34947 590 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 SRSF4Q08170 494 aaKnown RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 SF3A3Q12874 501 aaKnown RBP eCLIP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 FOXF2Q12947 444 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 PRKG1Q13976 671 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TIGD6Q17RP2 521 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 AAK1Q2M2I8 961 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3GQ6DHY5 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3CQ6IPX1 549 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 NFRKBQ6P4R8 1299 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 ZNF813Q6ZN06 617 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 SLC44A2Q8IWA5 706 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBC1D3Q8IZP1 549 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 SPATA5Q8NB90 893 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 SRFBP1Q8NEF9 429 aaKnown RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 MORC4Q8TE76 937 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 CPT1BQ92523 772 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 NPIPB3Q92617 1050 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 MYLK2Q9H1R3 596 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 PPCSQ9HAB8 311 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 PRDM16Q9HAZ2 1276 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 LIN7CQ9NUP9 197 aaKnown RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 ASNSD1Q9NWL6 643 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 GRHPRQ9UBQ7 328 aa5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 SIRT4Q9Y6E7 314 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 ARHGEF17Q96PE2 2063 aaPredicted RBP5.55□□□□□ -1.52
HMGB1P38-201ENST00000490557 TPD52L2O43399 206 aaKnown RBP5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 USP12O75317 370 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 TUBB4AP04350 444 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 ATF7P17544 494 aaPredicted RBP5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 NDUFS1P28331 727 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 MPGP29372 298 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 GRK6P43250 576 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 AGTR2P50052 363 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 MRPS21P82921 87 aaKnown RBP5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 FOXO1Q12778 655 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 FAM110CQ1W6H9 321 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 TUBB8Q3ZCM7 444 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 ANO7Q6IWH7 933 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 C16orf89Q6UX73 402 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 CNGA4Q8IV77 575 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 UEVLDQ8IX04 471 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 C8orf58Q8NAV2 365 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 TRAPPC12Q8WVT3 735 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 DDB2Q92466 427 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 DPF1Q92782 380 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 C3orf49Q96BT1 292 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 MCRS1Q96EZ8 462 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 KAZALD1Q96I82 304 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 FAM118BQ9BPY3 351 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 SENP7Q9BQF6 1050 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 ELOVL1Q9BW60 279 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 SEMA4CQ9C0C4 833 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 AGO4Q9HCK5 861 aaKnown RBP5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 KCNK9Q9NPC2 374 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 CNTN6Q9UQ52 1028 aa5.54□□□□□ -1.52
HMGB1P38-201ENST00000490557 ARID4BQ4LE39 1312 aaPredicted RBP5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 WDR17Q8IZU2 1322 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 M0QZQ0 153 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 PPP6CO00743 305 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 NKX2-8O15522 239 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 ALDOAP04075 364 aaKnown RBP5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 EPHB2P29323 1055 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 SRSF7Q16629 238 aaKnown RBP eCLIP5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 TBRG1Q3YBR2 411 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 LIN54Q6MZP7 749 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 KYAT3Q6YP21 454 aaKnown RBP5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 ZNF66Q6ZN08 573 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 RFX8Q6ZV50 586 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 ADPRHL1Q8NDY3 354 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 PNISRQ8TF01 805 aaKnown RBP5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 PIGKQ92643 395 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 TRAPPC9Q96Q05 1148 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 SORBS1Q9BX66 1292 aaKnown RBP5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 TMEM120AQ9BXJ8 343 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 KRTAP4-2Q9BYR5 136 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 PABPC3Q9H361 631 aaKnown RBP5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 NRIP3Q9NQ35 241 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 PRDM8Q9NQV8 689 aa5.53□□□□□ -1.52
HMGB1P38-201ENST00000490557 ADARB2Q9NS39 739 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms