RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CIPCQ9C0C6 399 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 TSPAN16Q9UKR8 245 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 NFE2L3Q9Y4A8 694 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 AKAP13Q12802 2813 aa12.97□□□□□ -0.33
CPSF3-204ENST00000489403 FAM221BA6H8Z2 402 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 CETN3O15182 167 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 STX10O60499 249 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 IGLV3-19P01714 112 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 EPHX1P07099 455 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 BCAT1P54687 386 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 SLC8A3P57103 927 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 TRIP6Q15654 476 aaKnown RBP12.96□□□□□ -0.33
CPSF3-204ENST00000489403 ZNF423Q2M1K9 1284 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 DCAF17Q5H9S7 520 aaPredicted RBP12.96□□□□□ -0.33
CPSF3-204ENST00000489403 TCERG1LQ5VWI1 586 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 RAB44Q7Z6P3 723 aaPredicted RBP12.96□□□□□ -0.33
CPSF3-204ENST00000489403 CACUL1Q86Y37 369 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 FMNL3Q8IVF7 1028 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 ZCCHC9Q8N567 271 aaKnown RBP12.96□□□□□ -0.33
CPSF3-204ENST00000489403 CADM4Q8NFZ8 388 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 SLC2A11Q9BYW1 496 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 ZDHHC5Q9C0B5 715 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 MIR1-1HGQ9H1L0 117 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 OLA1Q9NTK5 396 aaKnown RBP12.96□□□□□ -0.33
CPSF3-204ENST00000489403 SFMBT1Q9UHJ3 866 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 CEP295Q9C0D2 2601 aa12.96□□□□□ -0.33
CPSF3-204ENST00000489403 METTL12A8MUP2 240 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 TSPAN3O60637 253 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 ACADMP11310 421 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 HLA-EP13747 358 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 HLA-FP30511 346 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 OXTRP30559 389 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 RDXP35241 583 aaKnown RBP12.95□□□□□ -0.34
CPSF3-204ENST00000489403 PRCPP42785 496 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 ADIGQ0VDE8 80 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 BST2Q10589 180 aaKnown RBP12.95□□□□□ -0.34
CPSF3-204ENST00000489403 PNOCQ13519 176 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 CUL2Q13617 745 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 E2F5Q15329 346 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 MPPE1Q53F39 396 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 SERPINA13PQ6UXR4 307 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 ZC3H3Q8IXZ2 948 aaKnown RBP12.95□□□□□ -0.34
CPSF3-204ENST00000489403 EDEM1Q92611 657 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 SCAND2PQ9GZW5 306 aaPredicted RBP12.95□□□□□ -0.34
CPSF3-204ENST00000489403 IL21RQ9HBE5 538 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 LRRC4Q9HBW1 653 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 GDPD2Q9HCC8 539 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 STOML2Q9UJZ1 356 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 COQ4Q9Y3A0 265 aa12.95□□□□□ -0.34
CPSF3-204ENST00000489403 YJEFN3A6XGL0 299 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 E7ENQ6 273 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 SLC16A3O15427 465 aaKnown RBP12.94□□□□□ -0.34
CPSF3-204ENST00000489403 MSI1O43347 362 aaKnown RBP12.94□□□□□ -0.34
CPSF3-204ENST00000489403 TIMM44O43615 452 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 CBFA2T3O75081 653 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 FTH1P19P0C7X4 201 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 HARS2P49590 506 aaKnown RBP12.94□□□□□ -0.34
CPSF3-204ENST00000489403 SGSHP51688 502 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 PMS1P54277 932 aaKnown RBP12.94□□□□□ -0.34
CPSF3-204ENST00000489403 BNC1Q01954 994 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 ARID5AQ03989 594 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 SGO2Q562F6 1265 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 BSPRYQ5W0U4 402 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 UBR7Q8N806 425 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 OR2T3Q8NH03 318 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 UBA3Q8TBC4 463 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 RNF139Q8WU17 664 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 CYB5D2Q8WUJ1 264 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 ADAMTS14Q8WXS8 1223 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 IPO9Q96P70 1041 aaKnown RBP12.94□□□□□ -0.34
CPSF3-204ENST00000489403 NUP58Q9BVL2 599 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 TMEM245Q9H330 911 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 HESX1Q9UBX0 185 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 EIF2B4Q9UI10 523 aaKnown RBP12.94□□□□□ -0.34
CPSF3-204ENST00000489403 PCOLCE2Q9UKZ9 415 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 HBS1LQ9Y450 684 aaKnown RBP12.94□□□□□ -0.34
CPSF3-204ENST00000489403 PCDHB9Q9Y5E1 797 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 FREM2Q5SZK8 3169 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 CHD6Q8TD26 2715 aa12.94□□□□□ -0.34
CPSF3-204ENST00000489403 DMXL2Q8TDJ6 3036 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 O00370 1275 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 BCAT2O15382 392 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-204ENST00000489403 LATS1O95835 1130 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 CAPNS1P04632 268 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 SETSIPP0DME0 302 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 VDRP11473 427 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 CD19P15391 556 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 DAOAP59103 153 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 ZNF445P59923 1031 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 FKBP3Q00688 224 aaKnown RBP12.93□□□□□ -0.34
CPSF3-204ENST00000489403 CAMK2GQ13555 558 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-204ENST00000489403 PKDCCQ504Y2 493 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 FNDC3BQ53EP0 1204 aaKnown RBP12.93□□□□□ -0.34
CPSF3-204ENST00000489403 COBLL1Q53SF7 1204 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 ZNF658Q5TYW1 1059 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-204ENST00000489403 ANKRD40Q6AI12 368 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 CHST9Q7L1S5 443 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 KIAA0907Q7Z7F0 614 aaPredicted RBP12.93□□□□□ -0.34
CPSF3-204ENST00000489403 ADIPOR2Q86V24 386 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 FAM124AQ86V42 546 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms