RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SEMA5AQ13591 1074 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 BLMHQ13867 455 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 ZNF792Q3KQV3 632 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 C9orf57Q5W0N0 161 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 FASTKD5Q7L8L6 764 aaKnown RBP18.52■□□□□ 0.55
VIM-206ENST00000487938 SLC26A9Q7LBE3 791 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 CATSPER4Q7RTX7 472 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 ANKRD52Q8NB46 1076 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 ANKRD27Q96NW4 1050 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 EBF4Q9BQW3 602 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 XAB2Q9HCS7 855 aaKnown RBP18.52■□□□□ 0.55
VIM-206ENST00000487938 IL1RAPL1Q9NZN1 696 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 KLK14Q9P0G3 267 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 ZSWIM8A7E2V4 1837 aa18.52■□□□□ 0.55
VIM-206ENST00000487938 CAPN14A8MX76 684 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 SMNDC1O75940 238 aaKnown RBP eCLIP18.51■□□□□ 0.55
VIM-206ENST00000487938 UPP2O95045 317 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 ERFP50548 548 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 DCAF4L1Q3SXM0 396 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 ARHGAP17Q68EM7 881 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 ANO7Q6IWH7 933 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 SLC2A14Q8TDB8 520 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 NRG4Q8WWG1 115 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 DNAJC9Q8WXX5 260 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 CDCA5Q96FF9 252 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 NXF3Q9H4D5 531 aaKnown RBP18.51■□□□□ 0.55
VIM-206ENST00000487938 PLEKHA5Q9HAU0 1116 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 MKS1Q9NXB0 559 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.51■□□□□ 0.55
VIM-206ENST00000487938 SEPT10Q9P0V9 454 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 COL1A2P08123 1366 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 ZNF487B1APH4 448 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 CAPN9O14815 690 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 SPTLC1O15269 473 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 ITM2AO43736 263 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 SNNO75324 88 aaPredicted RBP18.51■□□□□ 0.55
VIM-206ENST00000487938 LYPLA1O75608 230 aaPredicted RBP18.51■□□□□ 0.55
VIM-206ENST00000487938 DGKIO75912 1065 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 PSMG1O95456 288 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 ATP6V1C1P21283 382 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 MGAT1P26572 445 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 SERPINB9P50453 376 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 AP1B1Q10567 949 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 THOC5Q13769 683 aaKnown RBP18.51■□□□□ 0.55
VIM-206ENST00000487938 MUM1Q2TAK8 710 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 FASTKD1Q53R41 847 aaKnown RBP18.51■□□□□ 0.55
VIM-206ENST00000487938 UNC93AQ86WB7 457 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 PPP1R14CQ8TAE6 165 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 KBTBD7Q8WVZ9 684 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 APBB2Q92870 758 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 STOML1Q9UBI4 398 aa18.51■□□□□ 0.55
VIM-206ENST00000487938 LUC7L3O95232 432 aaKnown RBP18.5■□□□□ 0.55
VIM-206ENST00000487938 BCAT1P54687 386 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 PITX1P78337 314 aaPredicted RBP18.5■□□□□ 0.55
VIM-206ENST00000487938 SARNPP82979 210 aaKnown RBP18.5■□□□□ 0.55
VIM-206ENST00000487938 SNX30Q5VWJ9 437 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 SLC27A1Q6PCB7 646 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 CES3Q6UWW8 571 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 DEFB106AQ8N104 65 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 RBM15BQ8NDT2 890 aaKnown RBP18.5■□□□□ 0.55
VIM-206ENST00000487938 FAM149B1Q96BN6 582 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 SPDL1Q96EA4 605 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 CLPTM1LQ96KA5 538 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 FAM161BQ96MY7 647 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 PGLYRP2Q96PD5 576 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 OSMRQ99650 979 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 OSBPL1AQ9BXW6 950 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 WWP1Q9H0M0 922 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 NMRK1Q9NWW6 199 aa18.5■□□□□ 0.55
VIM-206ENST00000487938 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.5■□□□□ 0.55
VIM-206ENST00000487938 HBS1LQ9Y450 684 aaKnown RBP18.5■□□□□ 0.55
VIM-206ENST00000487938 PLXNA1Q9UIW2 1896 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 DCAF8L1A6NGE4 600 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 TPP1O14773 563 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 MFSD11O43934 449 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 TBX10O75333 385 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 GJA5P36382 358 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 GMPRP36959 345 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 ARL4AP40617 200 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 RPL10AP62906 217 aaKnown RBP18.49■□□□□ 0.55
VIM-206ENST00000487938 UBAP2LQ14157 1087 aaKnown RBP18.49■□□□□ 0.55
VIM-206ENST00000487938 ZNF410Q86VK4 478 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 LRRC52Q8N7C0 313 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 GCOM2Q9BZD3 368 aaPredicted RBP18.49■□□□□ 0.55
VIM-206ENST00000487938 ADAMTS10Q9H324 1103 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 GOLGA2P5Q9HBQ8 144 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 FZD10Q9ULW2 581 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 DERAQ9Y315 318 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 PSAT1Q9Y617 370 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 USP3Q9Y6I4 520 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 SBF1O95248 1867 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 A0A0A0MRY4 1105 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 SDR42E2A6NKP2 422 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 PRR5-ARHGAP8B1AHC4 643 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 NVLO15381 856 aaKnown RBP18.49■□□□□ 0.55
VIM-206ENST00000487938 BIRC5O15392 142 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 RECQL4O94761 1208 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 SNAI1O95863 264 aaPredicted RBP18.49■□□□□ 0.55
VIM-206ENST00000487938 GSRP00390 522 aa18.49■□□□□ 0.55
VIM-206ENST00000487938 ALDOAP04075 364 aaKnown RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms