RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 FZD8Q9H461 694 aa12.58□□□□□ -0.39
COL3A1-206ENST00000487010 NRDE2Q9H7Z3 1164 aa12.58□□□□□ -0.39
COL3A1-206ENST00000487010 GBA2Q9HCG7 927 aaPredicted RBP12.58□□□□□ -0.39
COL3A1-206ENST00000487010 NGRNQ9NPE2 291 aaKnown RBP12.58□□□□□ -0.39
COL3A1-206ENST00000487010 PNPOQ9NVS9 261 aa12.58□□□□□ -0.39
COL3A1-206ENST00000487010 COMMD3-BMI1R4GMX3 469 aa12.58□□□□□ -0.39
COL3A1-206ENST00000487010 TPP1O14773 563 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 EGFRP00533 1210 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 ALOX15P16050 662 aaPredicted RBP12.58□□□□□ -0.4
COL3A1-206ENST00000487010 GRK2P25098 689 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 PEX2P28328 305 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 ADORA2AP29274 412 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 HSPA1LP34931 641 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 RPL26P61254 145 aaKnown RBP12.58□□□□□ -0.4
COL3A1-206ENST00000487010 NIPAL4Q0D2K0 466 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 SEMA5AQ13591 1074 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 LAMB3Q13751 1172 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 TMEM132AQ24JP5 1023 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 PDPK2PQ6A1A2 396 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 LCLAT1Q6UWP7 414 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 PACS1Q6VY07 963 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 ATG14Q6ZNE5 492 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 CATSPERGQ6ZRH7 1159 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 RSPH3Q86UC2 560 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 CXorf38Q8TB03 319 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 PPP4R1Q8TF05 950 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 SEPT1Q8WYJ6 367 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 CMTM5Q96DZ9 223 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 FAM167AQ96KS9 214 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 CDT1Q9H211 546 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 XPNPEP3Q9NQH7 507 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 DCDC2Q9UHG0 476 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 POMPQ9Y244 141 aa12.58□□□□□ -0.4
COL3A1-206ENST00000487010 GOLGB1Q14789 3259 aaKnown RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 IGKV6-21A0A0C4DH24 114 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 WDR27A2RRH5 827 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 LACTBL1A8MY62 500 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ZNF487B1APH4 448 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ZNF195O14628 629 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 MDM4O15151 490 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 GAS2O43903 313 aaKnown RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 PRKCGP05129 697 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 PFKMP08237 780 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 PTPRAP18433 802 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ITGAXP20702 1163 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 CYP2F1P24903 491 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ATICP31939 592 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 GRIA2P42262 883 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 SLC10A2Q12908 348 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 LSAMPQ13449 338 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 PPP6R3Q5H9R7 873 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 MAP3K21Q5TCX8 1036 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 JADE1Q6IE81 842 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 C10orf107Q8IVU9 208 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 FBXW8Q8N3Y1 598 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 NME8Q8N427 588 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 TFB1MQ8WVM0 346 aaKnown RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ATP2A3Q93084 1043 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 NLRP4Q96MN2 994 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 VPS33BQ9H267 617 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 VRTNQ9H8Y1 702 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 CYP4F11Q9HBI6 524 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 BTBD7Q9P203 1132 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 SLC17A6Q9P2U8 582 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 SF3B1O75533 1304 aaKnown RBP eCLIP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 LOC285556D6RIA3 1793 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ZBTB42B2RXF5 422 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 INO80B-WBP1J3KQ70 363 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 CASQ2O14958 399 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 PEX1O43933 1283 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 TOMM70O94826 608 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 P4HA1P13674 534 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 RAG1P15918 1043 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ARRB2P32121 409 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 RGS7P49802 495 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 NDST1P52848 882 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 GBE1Q04446 702 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 DEUP1Q05D60 604 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 DLG1Q12959 904 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 PRKG1Q13976 671 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 MMEL1Q495T6 779 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 NBPF12Q5TAG4 269 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ARHGAP22Q7Z5H3 698 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 SDCCAG8Q86SQ7 713 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 HPS6Q86YV9 775 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 DEFB107AQ8IZN7 70 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 CCDC124Q96CT7 223 aaKnown RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 DTNBP1Q96EV8 351 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 ZNF668Q96K58 619 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 EPAS1Q99814 870 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 SHCBP1LQ9BZQ2 653 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 INO80BQ9C086 356 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 TSPAN16Q9UKR8 245 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 BARX2Q9UMQ3 279 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-206ENST00000487010 TNFSF13BQ9Y275 285 aa12.57□□□□□ -0.4
COL3A1-206ENST00000487010 H3BNX3 289 aa12.56□□□□□ -0.4
COL3A1-206ENST00000487010 GPR25O00155 361 aa12.56□□□□□ -0.4
COL3A1-206ENST00000487010 NCF2P19878 526 aaPredicted RBP12.56□□□□□ -0.4
COL3A1-206ENST00000487010 SDC4P31431 198 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms