RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 ADAM33Q9BZ11 813 aa12.31□□□□□ -0.44
HPS4-214ENST00000485842 DEF6Q9H4E7 631 aa12.31□□□□□ -0.44
HPS4-214ENST00000485842 RBM12Q9NTZ6 932 aaKnown RBP12.31□□□□□ -0.44
HPS4-214ENST00000485842 PIGVQ9NUD9 493 aa12.31□□□□□ -0.44
HPS4-214ENST00000485842 SIT1Q9Y3P8 196 aa12.31□□□□□ -0.44
HPS4-214ENST00000485842 KIAA1549LQ6ZVL6 1849 aa12.31□□□□□ -0.44
HPS4-214ENST00000485842 ZDBF2Q9HCK1 2354 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 GOLGA6L7A0A1B0GV03 622 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 HOXC11O43248 304 aaPredicted RBP12.3□□□□□ -0.44
HPS4-214ENST00000485842 ADCY5O95622 1261 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 LATS1O95835 1130 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 CYBBP04839 570 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 SLC2A3P11169 496 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 TYRP14679 529 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 PDGFRAP16234 1089 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 ABCB4P21439 1286 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 GPD1P21695 349 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 SDC4P31431 198 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 RFC1P35251 1148 aaPredicted RBP12.3□□□□□ -0.44
HPS4-214ENST00000485842 OPRD1P41143 372 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 SLC6A11P48066 632 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 GALK1P51570 392 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 CLCN5P51795 746 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 ARID5BQ14865 1188 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 C15orf59Q2T9L4 293 aaPredicted RBP12.3□□□□□ -0.44
HPS4-214ENST00000485842 SLC25A52Q3SY17 297 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 CCDC122Q5T0U0 273 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 NADSYN1Q6IA69 706 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 RFWD3Q6PCD5 774 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 DCUN1D2Q6PH85 259 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 SND1Q7KZF4 910 aaKnown RBP eCLIP12.3□□□□□ -0.44
HPS4-214ENST00000485842 CHSY1Q86X52 802 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 CPXM2Q8N436 756 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 TMEM105Q8N8V8 129 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 ATP6V0D2Q8N8Y2 350 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 EXOC4Q96A65 974 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 TRIM11Q96F44 468 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 VCPIP1Q96JH7 1222 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 NELL2Q99435 816 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 DNAJC17Q9NVM6 304 aaKnown RBP12.3□□□□□ -0.44
HPS4-214ENST00000485842 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.3□□□□□ -0.44
HPS4-214ENST00000485842 MARK1Q9P0L2 795 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 CALCOCO1Q9P1Z2 691 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 MYO1AQ9UBC5 1043 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 CNOT8Q9UFF9 292 aaKnown RBP12.3□□□□□ -0.44
HPS4-214ENST00000485842 XPO7Q9UIA9 1087 aaKnown RBP12.3□□□□□ -0.44
HPS4-214ENST00000485842 MUC3AQ02505 3323 aa12.3□□□□□ -0.44
HPS4-214ENST00000485842 TCRBV5S1A1TA0A578 114 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 C2CD4BA6NLJ0 364 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 SIGLEC16A6NMB1 481 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 NCAM2O15394 837 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 AKR1B10O60218 316 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 TULP3O75386 442 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 EGFP01133 1207 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 AVPR2P30518 371 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 SLC6A4P31645 630 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 CCR1P32246 355 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 ATXN1P54253 815 aaKnown RBP12.29□□□□□ -0.44
HPS4-214ENST00000485842 RPL7AP62424 266 aaKnown RBP12.29□□□□□ -0.44
HPS4-214ENST00000485842 GFPT1Q06210 699 aaPredicted RBP12.29□□□□□ -0.44
HPS4-214ENST00000485842 GRSF1Q12849 480 aaKnown RBP eCLIP12.29□□□□□ -0.44
HPS4-214ENST00000485842 LRRC32Q14392 662 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 RAB6CQ53S08 254 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 FAM133BQ5BKY9 247 aaKnown RBP12.29□□□□□ -0.44
HPS4-214ENST00000485842 TMEM196Q5HYL7 178 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 ADGRF1Q5T601 910 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 RAP1GAP2Q684P5 730 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 GRAMD4Q6IC98 578 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 FSTL4Q6MZW2 842 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 ALKBH5Q6P6C2 394 aaKnown RBP12.29□□□□□ -0.44
HPS4-214ENST00000485842 ARCQ7LC44 396 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 FAM131BQ86XD5 332 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 FAM217AQ8IXS0 508 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 TC2NQ8N9U0 490 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 SPC24Q8NBT2 197 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 DDI1Q8WTU0 396 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 NT5C3BQ969T7 300 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 BTN2A3PQ96KV6 586 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 XPO6Q96QU8 1125 aaKnown RBP12.29□□□□□ -0.44
HPS4-214ENST00000485842 PNKPQ96T60 521 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 CHP1Q99653 195 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 DDX50Q9BQ39 737 aaKnown RBP12.29□□□□□ -0.44
HPS4-214ENST00000485842 OSBPL6Q9BZF3 934 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 RAB6CQ9H0N0 254 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 ISCUQ9H1K1 167 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 LMAN1LQ9HAT1 526 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 FBRSL1Q9HCM7 1045 aaKnown RBP12.29□□□□□ -0.44
HPS4-214ENST00000485842 ARHGEF4Q9NR80 690 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 PARVAQ9NVD7 372 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 SLC12A6Q9UHW9 1150 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 STOML2Q9UJZ1 356 aa12.29□□□□□ -0.44
HPS4-214ENST00000485842 SSU72P8A0A1W2PR75 194 aa12.28□□□□□ -0.44
HPS4-214ENST00000485842 KCNU1A8MYU2 1149 aa12.28□□□□□ -0.44
HPS4-214ENST00000485842 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.28□□□□□ -0.44
HPS4-214ENST00000485842 TRIM24O15164 1050 aa12.28□□□□□ -0.44
HPS4-214ENST00000485842 CCP110O43303 1012 aa12.28□□□□□ -0.44
HPS4-214ENST00000485842 CACNG3O60359 315 aa12.28□□□□□ -0.44
HPS4-214ENST00000485842 TBL1XO60907 577 aa12.28□□□□□ -0.44
HPS4-214ENST00000485842 F9P00740 461 aa12.28□□□□□ -0.44
HPS4-214ENST00000485842 PENKP01210 267 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms