RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 GAREM1Q9H706 876 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 ZSWIM4Q9H7M6 989 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 KIF9Q9HAQ2 790 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 BRMS1Q9HCU9 246 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 GPRC5CQ9NQ84 441 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 TM7SF3Q9NS93 570 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 SLC38A7Q9NVC3 462 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 SLAMF8Q9P0V8 285 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 NAP1L2Q9ULW6 460 aaPredicted RBP5.77□□□□□ -1.49
PTPN4-210ENST00000485247 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.77□□□□□ -1.49
PTPN4-210ENST00000485247 BTBD3Q9Y2F9 522 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 RBM8AQ9Y5S9 174 aaKnown RBP5.77□□□□□ -1.49
PTPN4-210ENST00000485247 TEX15Q9BXT5 2789 aa5.77□□□□□ -1.49
PTPN4-210ENST00000485247 CEP192Q8TEP8 1941 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 A0A087WWV3 80 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 IGHV1OR15-9A0A0B4J2B8 117 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 SHISA3A0PJX4 238 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 ACKR2O00590 384 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 FLRT2O43155 660 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 TNFSF14O43557 240 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 SLC37A4O43826 429 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 OAZ2O95190 189 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 LARGE1O95461 756 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 GP1BBP13224 206 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 GABRG2P18507 467 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 RPL9P32969 192 aaKnown RBP5.76□□□□□ -1.49
PTPN4-210ENST00000485247 HSPA4P34932 840 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 AFMP43652 599 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 MESP2Q0VG99 397 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 SCRN1Q12765 414 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 EPHA7Q15375 998 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 HLA-BQ31612 363 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 DCAF4L1Q3SXM0 396 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 MGAT5BQ3V5L5 792 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 EOGTQ5NDL2 527 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 SYCP2LQ5T4T6 812 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 ARHGAP40Q5TG30 622 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 CDCA2Q69YH5 1023 aaPredicted RBP5.76□□□□□ -1.49
PTPN4-210ENST00000485247 NCAPH2Q6IBW4 605 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 USP37Q86T82 979 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 TMEM150AQ86TG1 271 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 CHD1LQ86WJ1 897 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 TMPRSS12Q86WS5 348 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 CREG2Q8IUH2 290 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 FGF11Q92914 225 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 ERLEC1Q96DZ1 483 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 NAF1Q96HR8 494 aaKnown RBP5.76□□□□□ -1.49
PTPN4-210ENST00000485247 KIRREL1Q96J84 757 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 CCDC74BQ96LY2 380 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 TCEANC2Q96MN5 208 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 CCDC43Q96MW1 224 aaKnown RBP5.76□□□□□ -1.49
PTPN4-210ENST00000485247 ACAP3Q96P50 834 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 ZDHHC5Q9C0B5 715 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 CPNE5Q9HCH3 593 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 VPS54Q9P1Q0 977 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 CALCOCO1Q9P1Z2 691 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 ANKMY1Q9P2S6 941 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 SUSD2Q9UGT4 822 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 DDX25Q9UHL0 483 aaKnown RBP5.76□□□□□ -1.49
PTPN4-210ENST00000485247 GGT7Q9UJ14 662 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 ZMYM5Q9UJ78 669 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 DOPEY2Q9Y3R5 2298 aa5.76□□□□□ -1.49
PTPN4-210ENST00000485247 TRIP11Q15643 1979 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 MYO9AB2RTY4 2548 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 KLF18A0A0U1RQI7 1052 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 A0A1B0GTW7 788 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 LRRC10BA6NIK2 292 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 SLC22A31A6NKX4 558 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 OR6C75A6NL08 312 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 USO1O60763 962 aaKnown RBP5.75□□□□□ -1.49
PTPN4-210ENST00000485247 NDUFS2O75306 463 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 SLITRK3O94933 977 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 UBOX5O94941 541 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 CER1O95813 267 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 GLI1P08151 1106 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ZNF883P0CG24 379 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ZNF16P17020 682 aaPredicted RBP5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ATF6P18850 670 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 MATKP42679 507 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 SLC6A11P48066 632 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 TUFMP49411 452 aaKnown RBP5.75□□□□□ -1.49
PTPN4-210ENST00000485247 RARRES1P49788 294 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 NLRP5P59047 1200 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 TARDBPQ13148 414 aaKnown RBP eCLIP5.75□□□□□ -1.495e-6■□□□□ 11.3
PTPN4-210ENST00000485247 HDAC1Q13547 482 aaPredicted RBP5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ZNF77Q15935 545 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ZNF124Q15973 351 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 XKR4Q5GH76 650 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ATF7IP2Q5U623 682 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ARMCX5Q6P1M9 558 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ALKAL1Q6UXT8 129 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 DBX2Q6ZNG2 339 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 HS2ST1Q7LGA3 356 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 TSPYL5Q86VY4 417 aaPredicted RBP5.75□□□□□ -1.49
PTPN4-210ENST00000485247 PHACTR4Q8IZ21 702 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 ZCCHC9Q8N567 271 aaKnown RBP5.75□□□□□ -1.49
PTPN4-210ENST00000485247 STKLD1Q8NE28 680 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 CCDC148Q8NFR7 591 aa5.75□□□□□ -1.49
PTPN4-210ENST00000485247 MRPS31Q92665 395 aaKnown RBP5.75□□□□□ -1.49
PTPN4-210ENST00000485247 MED8Q96G25 268 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms