RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 TREHO43280 583 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 TMEM63AO94886 807 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 PDK4Q16654 411 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 CA9Q16790 459 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 SLC45A4Q5BKX6 768 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 TBC1D10AQ9BXI6 508 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 RBM22Q9NW64 420 aaKnown RBP eCLIP11.34□□□□□ -0.59
COL27A1-204ENST00000477421 BTBD19C9JJ37 291 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 BUD23O43709 281 aaKnown RBP11.34□□□□□ -0.59
COL27A1-204ENST00000477421 IRF1P10914 325 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 ASPAP45381 313 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 CYP1B1Q16678 543 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 SDHAF4Q5VUM1 108 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 MFSD5Q6N075 450 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 TAS2R42Q7RTR8 314 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 STKLD1Q8NE28 680 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.34□□□□□ -0.59
COL27A1-204ENST00000477421 RUVBL2Q9Y230 463 aaKnown RBP11.34□□□□□ -0.59
COL27A1-204ENST00000477421 C2CD2Q9Y426 696 aa11.34□□□□□ -0.59
COL27A1-204ENST00000477421 PFDN6O15212 129 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 GLRA3O75311 464 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 NUDT2P50583 147 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 MGAT5Q09328 741 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ACAP1Q15027 740 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 FSCN1Q16658 493 aaKnown RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ANO4Q32M45 955 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 RNASEH2BQ5TBB1 312 aaKnown RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 CMC1Q7Z7K0 106 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ZNF410Q86VK4 478 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 LCA5Q86VQ0 697 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ECHDC2Q86YB7 292 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 EFCAB3Q8N7B9 438 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ANKRD52Q8NB46 1076 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 NKD2Q969F2 451 aaPredicted RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 C12orf42Q96LP6 360 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 PCYT2Q99447 389 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 FICDQ9BVA6 458 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 RRAGCQ9HB90 399 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 DLGAP2Q9P1A6 1054 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 COL4A1P02462 1669 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 SMIM28A0A1B0GU29 152 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 TYW5A2RUC4 315 aaKnown RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 FZD9O00144 591 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 PAPSS1O43252 624 aaPredicted RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ZMPSTE24O75844 475 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 PDE5AO76074 875 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 UNC5CO95185 931 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 F7P08709 466 aaPredicted RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 PTPN4P29074 926 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 FOXN2P32314 431 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 NME5P56597 212 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 OVOS1Q6IE37 1185 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 KRT80Q6KB66 452 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 VSTM1Q6UX27 236 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ILDR2Q71H61 639 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 GALNT4Q8N4A0 578 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 GTF3C2Q8WUA4 911 aaPredicted RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ZFYVE28Q9HCC9 887 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ANLNQ9NQW6 1124 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 MAN1C1Q9NR34 630 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 OR12D3Q9UGF7 316 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 USP54Q70EL1 1684 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 A0A096LPK6 155 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 TSPAN1O60635 241 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 LTFP02788 710 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ZCCHC18P0CG32 403 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ODC1P11926 461 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 ERCC2P18074 760 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 NDUFV1P49821 464 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 COPAP53621 1224 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 WDR4P57081 412 aaKnown RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 NCALDP61601 193 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 PTAR1Q7Z6K3 402 aaPredicted RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 SPATA6LQ8N4H0 392 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 C12orf50Q8NA57 414 aaPredicted RBP11.33□□□□□ -0.6
COL27A1-204ENST00000477421 LHX5Q9H2C1 402 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 FZD8Q9H461 694 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 Q9H521 79 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 NT5MQ9NPB1 228 aa11.33□□□□□ -0.6
COL27A1-204ENST00000477421 DCXO43602 365 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 RGS2P41220 211 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 CSHL1Q14406 222 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 IQSEC1Q6DN90 963 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 RFWD2Q8NHY2 731 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 PHF21BQ96EK2 531 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 OXNAD1Q96HP4 312 aaPredicted RBP11.32□□□□□ -0.6
COL27A1-204ENST00000477421 HAPLN2Q9GZV7 340 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 TRPV6Q9H1D0 765 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 AFF4Q9UHB7 1163 aaKnown RBP11.32□□□□□ -0.6
COL27A1-204ENST00000477421 TPP1O14773 563 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 LYPLA1O75608 230 aaPredicted RBP11.32□□□□□ -0.6
COL27A1-204ENST00000477421 SUPT7LO94864 414 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 NPR3P17342 541 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 GRIA1P42261 906 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 NOMO1Q15155 1222 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 LCLAT1Q6UWP7 414 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 RAET1EQ8TD07 263 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 CD101Q93033 1021 aa11.32□□□□□ -0.6
COL27A1-204ENST00000477421 WNT8BQ93098 351 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms