RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MAGEA11P43364 429 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 RPS9P46781 194 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 GPR15P49685 360 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 NDUFA8P51970 172 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 AP3M2P53677 418 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 MLLT6P55198 1093 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 TNNC1P63316 161 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 CYP4F8P98187 520 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 FCHO2Q0JRZ9 810 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 STK4Q13043 487 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 TRPC3Q13507 836 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 ARHGAP29Q52LW3 1261 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 FAM171BQ6P995 826 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 ZC3H14Q6PJT7 736 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 LIMS2Q7Z4I7 341 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 OSTM1Q86WC4 334 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 CELF5Q8N6W0 485 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 BPIFB1Q8TDL5 484 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 CSGALNACT1Q8TDX6 532 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 TMEM174Q8WUU8 243 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 KBTBD7Q8WVZ9 684 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 FAM3CQ92520 227 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 NKD2Q969F2 451 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 SYAP1Q96A49 352 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 CLDN23Q96B33 292 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 TRMT2BQ96GJ1 504 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 CCDC34Q96HJ3 373 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 CHAMP1Q96JM3 812 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 SYT15Q9BQS2 421 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 SNX25Q9H3E2 840 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 SEMA4AQ9H3S1 761 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 SPATA6Q9NWH7 488 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 THG1LQ9NWX6 298 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 MAGEC2Q9UBF1 373 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 MAGED2Q9UNF1 606 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 PIAS3Q9Y6X2 628 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 MYO15AQ9UKN7 3530 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 FAM186AA6NE01 2351 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 ADAMTS20P59510 1910 aa7.25□□□□□ -1.25
CCDC88A-213ENST00000476903 MYBPHLA2RUH7 354 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 PRR23AA6NEV1 266 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 TCAF2A6NFQ2 919 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 SLC38A8A6NNN8 435 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 PDXKO00764 312 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 FANCGO15287 622 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 LAMTOR5O43504 91 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 HCRTO43612 131 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 CALUO43852 315 aaPredicted RBP7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 ATP2C2O75185 946 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 TACC1O75410 805 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 NOL4O94818 638 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 RHOBTB3O94955 611 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 CLSTN1O94985 981 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 PRAMEF12O95522 483 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 CST3P01034 146 aaPredicted RBP7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 NR3C1P04150 777 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 PDGFRBP09619 1106 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 SP9P0CG40 484 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 LMO2P25791 158 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 GNL1P36915 607 aaPredicted RBP7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 KPNA1P52294 538 aaPredicted RBP7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 MYL6P60660 151 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 PSMC1P62191 440 aaKnown RBP7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 BIRC3Q13489 604 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 DDR2Q16832 855 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 ZNF528Q3MIS6 628 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 WDR72Q3MJ13 1102 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 SDHAF4Q5VUM1 108 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 VSTM1Q6UX27 236 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 KRBA2Q6ZNG9 492 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 ARMCX6Q7L4S7 300 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 ASCL5Q7RTU5 278 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 TMEM150AQ86TG1 271 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 C12orf40Q86WS4 652 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 SCN4BQ8IWT1 228 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 CMTM8Q8IZV2 173 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 MAB21L3Q8N8X9 362 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 FSIP1Q8NA03 581 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 STKLD1Q8NE28 680 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 OR6B3Q8NGW1 331 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 PARD3BQ8TEW8 1205 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 MRPS31Q92665 395 aaKnown RBP7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 RELTQ969Z4 430 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 MYLPFQ96A32 169 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 RSPRY1Q96DX4 576 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 SPATA17Q96L03 361 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 CEP295NLQ96MC4 621 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 ALPK1Q96QP1 1244 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 IER2Q9BTL4 223 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 SLC46A2Q9BY10 475 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 KCTD10Q9H3F6 313 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 C8orf33Q9H7E9 229 aaPredicted RBP7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 KIF9Q9HAQ2 790 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 DMAC2Q9NW81 257 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 EHD2Q9NZN4 543 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 FBXO4Q9UKT5 387 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 NDRG2Q9UN36 371 aaKnown RBP7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 FRMD4BQ9Y2L6 1034 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 CAPN6Q9Y6Q1 641 aa7.24□□□□□ -1.25
CCDC88A-213ENST00000476903 PTPRZ1P23471 2315 aaPredicted RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms