RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 TLE3Q04726 772 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 MPP3Q13368 585 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 CTXN3Q4LDR2 81 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 L1TD1Q5T7N2 865 aaKnown RBP6.7□□□□□ -1.34
VPS50-212ENST00000476413 LAIR1Q6GTX8 287 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 SFTPA1Q8IWL2 248 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 PPHLN1Q8NEY8 458 aaKnown RBP6.7□□□□□ -1.34
VPS50-212ENST00000476413 OR52L2PQ8NGH6 319 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 CLEC4CQ8WTT0 213 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 SKA1Q96BD8 255 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 PDLIM2Q96JY6 352 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 ELOVL1Q9BW60 279 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 NOD2Q9HC29 1040 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 ABHD10Q9NUJ1 306 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 SEMA5BQ9P283 1151 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 CCNL1Q9UK58 526 aaPredicted RBP6.7□□□□□ -1.34
VPS50-212ENST00000476413 SLC12A4Q9UP95 1085 aa6.7□□□□□ -1.34
VPS50-212ENST00000476413 ZNF213O14771 459 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 KAT7O95251 611 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 EBLN1P0CF75 366 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 MYCLP12524 364 aaPredicted RBP6.69□□□□□ -1.34
VPS50-212ENST00000476413 ATP1A3P13637 1013 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 APEHP13798 732 aaKnown RBP6.69□□□□□ -1.34
VPS50-212ENST00000476413 GEMIN4P57678 1058 aaKnown RBP6.69□□□□□ -1.34
VPS50-212ENST00000476413 MRPS35P82673 323 aaKnown RBP6.69□□□□□ -1.34
VPS50-212ENST00000476413 RNASELQ05823 741 aaKnown RBP6.69□□□□□ -1.34
VPS50-212ENST00000476413 CCDC15Q0P6D6 951 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 KIRREL2Q6UWL6 708 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 KIAA1324Q6UXG2 1013 aaKnown RBP6.69□□□□□ -1.34
VPS50-212ENST00000476413 SYNE3Q6ZMZ3 975 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 PTGR2Q8N8N7 351 aaPredicted RBP6.69□□□□□ -1.34
VPS50-212ENST00000476413 FAM71DQ8N9W8 422 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 USP38Q8NB14 1042 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 BEND2Q8NDZ0 799 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 ABHD11Q8NFV4 315 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 LINS1Q8NG48 757 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 ACTRT2Q8TDY3 377 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 NPAS1Q99742 590 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 SLC26A6Q9BXS9 759 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 AGXT2Q9BYV1 514 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 GPR63Q9BZJ6 419 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 ALG13Q9NP73 1137 aaKnown RBP6.69□□□□□ -1.34
VPS50-212ENST00000476413 SNX15Q9NRS6 342 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 TMLHEQ9NVH6 421 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 FZD4Q9ULV1 537 aa6.69□□□□□ -1.34
VPS50-212ENST00000476413 TTLL1O95922 423 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 NPSP0C0P6 89 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 ACP5P13686 325 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 CHN1P15882 459 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 ZNF37AP17032 561 aaPredicted RBP6.68□□□□□ -1.34
VPS50-212ENST00000476413 XBP1P17861 261 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 IGFBP2P18065 325 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 GRK5P34947 590 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 RCAN1P53805 252 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 EEFSECP57772 596 aaKnown RBP6.68□□□□□ -1.34
VPS50-212ENST00000476413 KRTAP10-2P60368 255 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 LMOD3Q0VAK6 560 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 MAPK7Q13164 816 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 ANKRD1Q15327 319 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D25Q3MII6 688 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 ATG16L1Q676U5 607 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 CLEC4GQ6UXB4 293 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 MAATS1Q7Z4T9 603 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 C12orf76Q8N812 135 aaPredicted RBP6.68□□□□□ -1.34
VPS50-212ENST00000476413 MACROD1Q9BQ69 325 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 UNC45AQ9H3U1 944 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 USP29Q9HBJ7 922 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 ASIC5Q9NY37 505 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 VPS4AQ9UN37 437 aa6.68□□□□□ -1.34
VPS50-212ENST00000476413 CYP3A7-CYP3A51PA0A087WV96 503 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3DA0A087WVF3 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3IA0A087WXS9 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3EA0A087X179 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3KA0A087X1G2 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3BA6NDS4 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3FA6NER0 549 aaPredicted RBP6.67□□□□□ -1.34
VPS50-212ENST00000476413 SAC3D1A6NKF1 404 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3LB9A6J9 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 MBD4O95243 580 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3HP0C7X1 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 ATF7P17544 494 aaPredicted RBP6.67□□□□□ -1.34
VPS50-212ENST00000476413 NDUFB7P17568 137 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 MAKP20794 623 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 DRD4P21917 467 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 MATN1P21941 496 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 CYP3A7P24462 503 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 DUSP1P28562 367 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 RXRGP48443 463 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 JAK3P52333 1124 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TAP1Q03518 808 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 GAB1Q13480 694 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 ZNF169Q14929 603 aaPredicted RBP6.67□□□□□ -1.34
VPS50-212ENST00000476413 AARS2Q5JTZ9 985 aaKnown RBP6.67□□□□□ -1.34
VPS50-212ENST00000476413 SLC9C2Q5TAH2 1124 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3GQ6DHY5 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3CQ6IPX1 549 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 KYAT3Q6YP21 454 aaKnown RBP6.67□□□□□ -1.34
VPS50-212ENST00000476413 C1orf122Q6ZSJ8 110 aa6.67□□□□□ -1.34
VPS50-212ENST00000476413 BCDIN3DQ7Z5W3 292 aaKnown RBP6.67□□□□□ -1.34
VPS50-212ENST00000476413 TBC1D3Q8IZP1 549 aaPredicted RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms