RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 HNF1BP35680 557 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 PIK3CAP42336 1068 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 EFEMP1Q12805 493 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 CAMK2BQ13554 666 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 CAMK2GQ13555 558 aaPredicted RBP13.2□□□□□ -0.3
SKA3-206ENST00000475251 PTPRNQ16849 979 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 TTC31Q49AM3 519 aaPredicted RBP13.2□□□□□ -0.3
SKA3-206ENST00000475251 MPPE1Q53F39 396 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 RSRC2Q7L4I2 434 aaKnown RBP13.2□□□□□ -0.3
SKA3-206ENST00000475251 TMPRSS12Q86WS5 348 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 CACUL1Q86Y37 369 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 DENND1CQ8IV53 801 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 SLC9A9Q8IVB4 645 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 CCDC150Q8NCX0 1101 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 PLEKHO2Q8TD55 490 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 TMC2Q8TDI7 906 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 WFIKKN2Q8TEU8 576 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 GOLGA1Q92805 767 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 SKA1Q96BD8 255 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 PLD4Q96BZ4 506 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 NXPE2Q96DL1 559 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 BACH2Q9BYV9 841 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 FTSJ1Q9UET6 329 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 AGO1Q9UL18 857 aaKnown RBP13.2□□□□□ -0.3
SKA3-206ENST00000475251 SNX11Q9Y5W9 270 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 USP3Q9Y6I4 520 aa13.2□□□□□ -0.3
SKA3-206ENST00000475251 PAPSS1O43252 624 aaPredicted RBP13.19□□□□□ -0.3
SKA3-206ENST00000475251 CUTAO60888 179 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 SEMA4FO95754 770 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 DNTTP04053 509 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 HMBSP08397 361 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 CD27P26842 260 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 ACSL1P33121 698 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 BCAT1P54687 386 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 SLC8A3P57103 927 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 SFSWAPQ12872 951 aaKnown RBP13.19□□□□□ -0.3
SKA3-206ENST00000475251 FNDC3BQ53EP0 1204 aaKnown RBP13.19□□□□□ -0.3
SKA3-206ENST00000475251 C6orf118Q5T5N4 469 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 LRRC69Q6ZNQ3 347 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 SV2AQ7L0J3 742 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 SCD5Q86SK9 330 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 ZNF396Q96N95 335 aaPredicted RBP13.19□□□□□ -0.3
SKA3-206ENST00000475251 DUSP16Q9BY84 665 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 C6orf106Q9H6K1 298 aaPredicted RBP13.19□□□□□ -0.3
SKA3-206ENST00000475251 SGK2Q9HBY8 427 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 TM9SF3Q9HD45 589 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 MARCH2Q9P0N8 246 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 BTBD3Q9Y2F9 522 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 FRMD4BQ9Y2L6 1034 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 PCDHGA1Q9Y5H4 931 aa13.19□□□□□ -0.3
SKA3-206ENST00000475251 FAM149AA5PLN7 773 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 YEATS4O95619 227 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 HARS2P49590 506 aaKnown RBP13.18□□□□□ -0.3
SKA3-206ENST00000475251 C21orf59P57076 290 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 DLG4P78352 724 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 CCDC157Q569K6 752 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 FAM217AQ8IXS0 508 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 TTC39CQ8N584 583 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 RBBP8NLQ8NC74 664 aaPredicted RBP13.18□□□□□ -0.3
SKA3-206ENST00000475251 SORCS1Q8WY21 1168 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 ELMO3Q96BJ8 720 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 BIRC7Q96CA5 298 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 INTS4Q96HW7 963 aaKnown RBP13.18□□□□□ -0.3
SKA3-206ENST00000475251 ACE2Q9BYF1 805 aaPredicted RBP13.18□□□□□ -0.3
SKA3-206ENST00000475251 BLZF1Q9H2G9 400 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 TMEM245Q9H330 911 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 OLA1Q9NTK5 396 aaKnown RBP13.18□□□□□ -0.3
SKA3-206ENST00000475251 DMAC2Q9NW81 257 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 FAM13BQ9NYF5 915 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 SCML1Q9UN30 329 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 MTMR6Q9Y217 621 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 APC2O95996 2303 aa13.18□□□□□ -0.3
SKA3-206ENST00000475251 IGSF10Q6WRI0 2623 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 URB1O60287 2271 aaKnown RBP13.17□□□□□ -0.3
SKA3-206ENST00000475251 SLC12A8A0AV02 714 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 PDXKO00764 312 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 YKT6O15498 198 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 POLR2DO15514 142 aaKnown RBP13.17□□□□□ -0.3
SKA3-206ENST00000475251 RRP8O43159 456 aaKnown RBP13.17□□□□□ -0.3
SKA3-206ENST00000475251 TSPAN3O60637 253 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 FSBPO95073 299 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 HLA-DRAP01903 254 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 ATP5BP06576 529 aaKnown RBP13.17□□□□□ -0.3
SKA3-206ENST00000475251 C1SP09871 688 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 CTSKP43235 329 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 SPOPLQ6IQ16 392 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 SHC4Q6S5L8 630 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 DHRS13Q6UX07 377 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 AHI1Q8N157 1196 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 ZNF557Q8N988 423 aaPredicted RBP13.17□□□□□ -0.3
SKA3-206ENST00000475251 LSM14AQ8ND56 463 aaKnown RBP13.17□□□□□ -0.3
SKA3-206ENST00000475251 PIP4K2CQ8TBX8 421 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 ADAM32Q8TC27 787 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 COL26A1Q96A83 441 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 P2RY11Q96G91 374 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 TWNKQ96RR1 684 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 UBXN6Q9BZV1 441 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 NIF3L1Q9GZT8 377 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 SUN2Q9UH99 717 aa13.17□□□□□ -0.3
SKA3-206ENST00000475251 NCKAP1Q9Y2A7 1128 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms