RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FBXL22Q6P050 247 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 PDXDC1Q6P996 788 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 ADGRF4Q8IZF3 695 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 SUN3Q8TAQ9 357 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 TMEM255BQ8WV15 326 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 PHF21BQ96EK2 531 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 LRGUKQ96M69 825 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 WDR83Q9BRX9 315 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 AASDHPPTQ9NRN7 309 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 PLSCR4Q9NRQ2 329 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 ANAPC4Q9UJX5 808 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 PCDHB2Q9Y5E7 798 aa3.91□□□□□ -1.78
CCDC88A-212ENST00000474059 AQP7P3A6NL99 342 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 PRPF4O43172 522 aaKnown RBP eCLIP3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 ZC3H11AO75152 810 aaKnown RBP eCLIP3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 ZNF432O94892 652 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 PBX1P40424 430 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 PDLIM4P50479 330 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 GAS1P54826 345 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 DMWDQ09019 674 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 KCNJ12Q14500 433 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 CNGA3Q16281 694 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 ZNF474Q6S9Z5 364 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 KYAT3Q6YP21 454 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 TRAPPC11Q7Z392 1133 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 SESTD1Q86VW0 696 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 RHPN2Q8IUC4 686 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 MBD3L2Q8NHZ7 208 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 WBP1Q96G27 269 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 SUCLG2Q96I99 432 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 RNF26Q9BY78 433 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 TMEM60Q9H2L4 133 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 AAMDCQ9H7C9 122 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 RMI1Q9H9A7 625 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 PLEKHB1Q9UF11 243 aaPredicted RBP3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 AFF4Q9UHB7 1163 aaKnown RBP3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 HDAC9Q9UKV0 1011 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 VPS4AQ9UN37 437 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 HPSEQ9Y251 543 aa3.9□□□□□ -1.79
CCDC88A-212ENST00000474059 A6NNZ2 444 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 FRS3O43559 492 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 CAMTA2O94983 1202 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 IL18RAPO95256 599 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 IFNA2P01563 188 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 HSPA6P17066 643 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 TPH1P17752 444 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 DUSP1P28562 367 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 FMO1Q01740 532 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 MCL1Q07820 350 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 DLGAP5Q15398 846 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 PRSS57Q6UWY2 283 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 SRGAP1Q7Z6B7 1085 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 GPSM1Q86YR5 675 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 P3H2Q8IVL5 708 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 PRR26Q8N8Z3 221 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 TMEM174Q8WUU8 243 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 AKAP1Q92667 903 aaKnown RBP eCLIP3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 RUNDC1Q96C34 613 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 FAM227BQ96M60 508 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 WDR24Q96S15 920 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 SENP7Q9BQF6 1050 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 TTLL2Q9BWV7 592 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 MAP6D1Q9H9H5 199 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 SPAG4Q9NPE6 437 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 UTS2RQ9UKP6 389 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 SPATA31A5Q5VU36 1347 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 SPATA31A7Q8IWB4 1347 aa3.89□□□□□ -1.79
CCDC88A-212ENST00000474059 ISM1B1AKI9 464 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 USP12O75317 370 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 ARP10275 920 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 BRAFP15056 766 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 RHCEP18577 417 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 STAT6P42226 847 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 RFX5P48382 616 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 ENTPD1P49961 510 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 HILS1P60008 231 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 CNN3Q15417 329 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 CNGA2Q16280 664 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 FAM76BQ5HYJ3 339 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 C6orf10Q5SRN2 563 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 FAM90A2PQ658T7 463 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 SLC39A5Q6ZMH5 540 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 DDIASQ8IXT1 998 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 ZFPM2Q8WW38 1151 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 ZNF845Q96IR2 970 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 SF3B5Q9BWJ5 86 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 SIRT3Q9NTG7 399 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 WNT16Q9UBV4 365 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 L1RE1Q9UN81 338 aa3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 ZNF335Q9H4Z2 1342 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-212ENST00000474059 A0A087WZ62 844 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 RPS10-NUDT3A0A1W2PQS6 291 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 CAPN8A6NHC0 703 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 INAFM1C9JVW0 142 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 SNX2O60749 519 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 S100BP04271 92 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 Q0VFX4 171 aa3.87□□□□□ -1.79
CCDC88A-212ENST00000474059 PIN1Q13526 163 aaPredicted RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms