RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 EPAS1Q99814 870 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 TMEM121Q9BTD3 319 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 ZBED2Q9BTP6 218 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 HTATIP2Q9BUP3 242 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 TKTL2Q9H0I9 626 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 ZBP1Q9H171 429 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 MTIF3Q9H2K0 278 aaKnown RBP9.72□□□□□ -0.85
VPS52-216ENST00000471309 ANLNQ9NQW6 1124 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 TMPRSS4Q9NRS4 437 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 MRPL17Q9NRX2 175 aaKnown RBP9.72□□□□□ -0.85
VPS52-216ENST00000471309 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.72□□□□□ -0.85
VPS52-216ENST00000471309 FAM53CQ9NYF3 392 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 CXXC1Q9P0U4 656 aaPredicted RBP9.72□□□□□ -0.85
VPS52-216ENST00000471309 HPCAL4Q9UM19 191 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 TLR6Q9Y2C9 796 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 YIPF1Q9Y548 306 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 SLC4A7Q9Y6M7 1214 aa9.72□□□□□ -0.85
VPS52-216ENST00000471309 ZNF638Q14966 1978 aaKnown RBP9.72□□□□□ -0.85
VPS52-216ENST00000471309 KIAA0100Q14667 2235 aaKnown RBP9.71□□□□□ -0.85
VPS52-216ENST00000471309 TNRC18O15417 2968 aaPredicted RBP9.71□□□□□ -0.85
VPS52-216ENST00000471309 BCLAF3A2AJT9 711 aaKnown RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 TP73O15350 636 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 LILRB3O75022 631 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 PPFIA2O75334 1257 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 ZNF189O75820 626 aaPredicted RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 SEC24AO95486 1093 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 CTSAP10619 480 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 SLC2A3P11169 496 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 STIP1P31948 543 aaKnown RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 CCR1P32246 355 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 ADCY8P40145 1251 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 PLTPP55058 493 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 GDF10P55107 478 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 TPI1P60174 286 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 NRG1Q02297 640 aaPredicted RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 MTMR3Q13615 1198 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 PAFAH1B3Q15102 231 aaKnown RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 KCTD19Q17RG1 926 aaPredicted RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 SNX30Q5VWJ9 437 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 C1orf228Q6PIY5 440 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 RHBDF2Q6PJF5 856 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 BZW1Q7L1Q6 419 aaKnown RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 TMC3Q7Z5M5 1100 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 ZNF276Q8N554 614 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 GLIS1Q8NBF1 620 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 RSAD2Q8WXG1 361 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 RNF34Q969K3 372 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 RTP4Q96DX8 246 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 TRMT2BQ96GJ1 504 aaKnown RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 QKIQ96PU8 341 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS52-216ENST00000471309 HAPLN3Q96S86 360 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 CDK5RAP1Q96SZ6 601 aaKnown RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 RAD9AQ99638 391 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 MAGEB5Q9BZ81 275 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 TXLNGYQ9BZA5 131 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 UBE2OQ9C0C9 1292 aaKnown RBP9.71□□□□□ -0.86
VPS52-216ENST00000471309 TSPYL1Q9H0U9 437 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 OSBPL2Q9H1P3 480 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 RXFP1Q9HBX9 757 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 HEY1Q9Y5J3 304 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 RAD54BQ9Y620 910 aa9.71□□□□□ -0.86
VPS52-216ENST00000471309 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 KCNU1A8MYU2 1149 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 HACD1B0YJ81 288 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 FAM72CH0Y354 149 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 DNALI1O14645 258 aaPredicted RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 DCLK1O15075 740 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 MSI1O43347 362 aaKnown RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 CREB3O43889 395 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 MFSD11O43934 449 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 PAGE1O75459 146 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 IGLV3-27P01718 113 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 CSH1P0DML2 217 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 CSH2P0DML3 217 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 RARGP13631 454 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 ATP2A2P16615 1042 aaKnown RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 AMPD1P23109 780 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 DNAJB2P25686 324 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 HOXC13P31276 330 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 VPS41P49754 854 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 ITGA8P53708 1063 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 GBE1Q04446 702 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 GPS1Q13098 491 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 GPS2Q13227 327 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 MTA1Q13330 715 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 TRIP4Q15650 581 aaPredicted RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 P3H1Q32P28 736 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 SLC45A4Q5BKX6 768 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 FAM72AQ5TYM5 149 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 RASIP1Q5U651 963 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 IZUMO3Q5VZ72 239 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 ALS2CLQ60I27 953 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 FAM72DQ6L9T8 149 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 HIBCHQ6NVY1 386 aaPredicted RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 DARS2Q6PI48 645 aaKnown RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 CEP128Q6ZU80 1094 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 PDZD4Q76G19 769 aaPredicted RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 TADA2BQ86TJ2 420 aa9.7□□□□□ -0.86
VPS52-216ENST00000471309 ZC3H18Q86VM9 953 aaKnown RBP9.7□□□□□ -0.86
VPS52-216ENST00000471309 FAM72BQ86X60 149 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms