RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 KLHL3Q9UH77 587 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 GTF3C4Q9UKN8 822 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 PCOLCE2Q9UKZ9 415 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 MSRB2Q9Y3D2 182 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 PCDHB12Q9Y5F1 795 aa5□□□□□ -1.61
SF3B1-208ENST00000470268 EYSQ5T1H1 3165 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TULP2O00295 520 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 O00370 1275 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 RNGTTO60942 597 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 BEST1O76090 585 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 SERPING1P05155 500 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PAEPP09466 180 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CD19P15391 556 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PTPN1P18031 435 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PAX3P23760 479 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PPM1AP35813 382 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PDE6CP51160 858 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 ERVK-21P61565 698 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 YWHAEP62258 255 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 RBM10P98175 930 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CDK17Q00537 523 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CDR2Q01850 454 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CYP27A1Q02318 531 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 DSG1Q02413 1049 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 GFPT1Q06210 699 aaPredicted RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 ELAVL2Q12926 359 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PTPN14Q15678 1187 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 FXNQ16595 210 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 USP41Q3LFD5 358 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CTXN3Q4LDR2 81 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TDRD12Q587J7 1177 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 MDH1BQ5I0G3 518 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 FAM171BQ6P995 826 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TOGARAM2Q6ZUX3 1019 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TTC30AQ86WT1 665 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PASD1Q8IV76 773 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 FAM20CQ8IXL6 584 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 WDTC1Q8N5D0 677 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TTC9BQ8N6N2 239 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 SLC2A14Q8TDB8 520 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 POF1BQ8WVV4 589 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 RIN2Q8WYP3 895 aaPredicted RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 EZH1Q92800 747 aaPredicted RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CYFIP2Q96F07 1278 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 AGPAT1Q99943 283 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 SYT15Q9BQS2 421 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 HERC2P3Q9BVR0 1158 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 YIPF2Q9BWQ6 316 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 B3GNT5Q9BYG0 378 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 ZCWPW1Q9H0M4 648 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PUF60Q9UHX1 559 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CYTH4Q9UIA0 394 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TSPAN16Q9UKR8 245 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 DSEQ9UL01 958 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CDH9Q9ULB4 789 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 NENFQ9UMX5 172 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TFR2Q9UP52 801 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 REXO2Q9Y3B8 237 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CDY1Q9Y6F8 540 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 XIRP2A4UGR9 3374 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TSC2P49815 1807 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 SSU72P8A0A1W2PR75 194 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 WDR27A2RRH5 827 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 HIDE1A8MVS5 230 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 UPK3BL1B0FP48 263 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 UPK3BL2E5RIL1 263 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 RFXAPO00287 272 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 RGS13O14921 159 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TEX28O15482 410 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 THAP12O43422 761 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CYP1A1P04798 512 aaPredicted RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CTSAP10619 480 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 VDRP11473 427 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 UNGP13051 313 aaPredicted RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PCSK1P29120 753 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 GPD2P43304 727 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 GLUD2P49448 558 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 KIF11P52732 1056 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 ROR1Q01973 937 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 KRT17Q04695 432 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CNGA2Q16280 664 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PSMD5Q16401 504 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PPP2R5EQ16537 467 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 DDR2Q16832 855 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 SLC39A12Q504Y0 691 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 C2CD6Q53TS8 623 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 SGO2Q562F6 1265 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 ARHGAP17Q68EM7 881 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 SLC8B1Q6J4K2 584 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 ZNF280DQ6N043 979 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 DENND1BQ6P3S1 775 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 LCLAT1Q6UWP7 414 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CYP26C1Q6V0L0 522 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 METTL23Q86XA0 190 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TMTC1Q8IUR5 882 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 CCAR2Q8N163 923 aaKnown RBP4.99□□□□□ -1.61
SF3B1-208ENST00000470268 TTC39CQ8N584 583 aa4.99□□□□□ -1.61
SF3B1-208ENST00000470268 ATAD1Q8NBU5 361 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms