RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 FASNP49327 2511 aaKnown RBP23.68■■□□□ 1.38
USP4-208ENST00000464168 METTL12A8MUP2 240 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 TAF4O00268 1085 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 TIMM44O43615 452 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 TKTL1P51854 596 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 TRIP4Q15650 581 aaPredicted RBP23.67■■□□□ 1.38
USP4-208ENST00000464168 DCAF12L1Q5VU92 463 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 BHLHA9Q7RTU4 235 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 ADAMTS14Q8WXS8 1223 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 NUP58Q9BVL2 599 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 CIPCQ9C0C6 399 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 MIR1-1HGQ9H1L0 117 aa23.67■■□□□ 1.38
USP4-208ENST00000464168 TULP2O00295 520 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 CBFA2T3O75081 653 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 ZBED1O96006 694 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 FTH1P19P0C7X4 201 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 HOXB3P14651 431 aaPredicted RBP23.66■■□□□ 1.38
USP4-208ENST00000464168 MXI1P50539 228 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 BNC1Q01954 994 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 RING1Q06587 406 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 E2F5Q15329 346 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 EDRF1Q3B7T1 1238 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 KRBA2Q6ZNG9 492 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 PNPLA1Q8N8W4 532 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 C1orf216Q8TAB5 229 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 PLD4Q96BZ4 506 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 ULBP1Q9BZM6 244 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 IL21RQ9HBE5 538 aa23.66■■□□□ 1.38
USP4-208ENST00000464168 BCAT2O15382 392 aaPredicted RBP23.65■■□□□ 1.38
USP4-208ENST00000464168 EPHX1P07099 455 aa23.65■■□□□ 1.38
USP4-208ENST00000464168 SLC8A3P57103 927 aa23.65■■□□□ 1.38
USP4-208ENST00000464168 KRT85P78386 507 aa23.65■■□□□ 1.38
USP4-208ENST00000464168 SERPINA13PQ6UXR4 307 aa23.65■■□□□ 1.38
USP4-208ENST00000464168 EIF2B4Q9UI10 523 aaKnown RBP23.65■■□□□ 1.38
USP4-208ENST00000464168 ZDHHC9Q9Y397 364 aa23.65■■□□□ 1.38
USP4-208ENST00000464168 ACADMP11310 421 aa23.64■■□□□ 1.37
USP4-208ENST00000464168 HOXD9P28356 352 aaPredicted RBP23.64■■□□□ 1.37
USP4-208ENST00000464168 PDE4CQ08493 712 aa23.64■■□□□ 1.37
USP4-208ENST00000464168 LRSAM1Q6UWE0 723 aa23.64■■□□□ 1.37
USP4-208ENST00000464168 GLRX5Q86SX6 157 aa23.64■■□□□ 1.37
USP4-208ENST00000464168 CACUL1Q86Y37 369 aa23.64■■□□□ 1.37
USP4-208ENST00000464168 FMNL3Q8IVF7 1028 aa23.64■■□□□ 1.37
USP4-208ENST00000464168 GAREM1Q9H706 876 aa23.64■■□□□ 1.37
USP4-208ENST00000464168 PCOLCE2Q9UKZ9 415 aa23.64■■□□□ 1.37
USP4-208ENST00000464168 STX10O60499 249 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 TSPAN3O60637 253 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 HLA-EP13747 358 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 HARS2P49590 506 aaKnown RBP23.63■■□□□ 1.37
USP4-208ENST00000464168 CAMK2GQ13555 558 aaPredicted RBP23.63■■□□□ 1.37
USP4-208ENST00000464168 GOLGA7BQ2TAP0 167 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 MPPE1Q53F39 396 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 SLCO6A1Q86UG4 719 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 FAM124AQ86V42 546 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 PROSER1Q86XN7 944 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 SMYD4Q8IYR2 804 aaPredicted RBP23.63■■□□□ 1.37
USP4-208ENST00000464168 OR2T3Q8NH03 318 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 GOLPH3LQ9H4A5 285 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 OLA1Q9NTK5 396 aaKnown RBP23.63■■□□□ 1.37
USP4-208ENST00000464168 CABIN1Q9Y6J0 2220 aa23.63■■□□□ 1.37
USP4-208ENST00000464168 CKAP5Q14008 2032 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 XPO1O14980 1071 aaKnown RBP23.62■■□□□ 1.37
USP4-208ENST00000464168 ZNF883P0CG24 379 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 C7P10643 843 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 HLA-FP30511 346 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 ARID5AQ03989 594 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 SCAPQ12770 1279 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 HLA-BQ31612 363 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 CBWD6Q4V339 395 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 CBWD3Q5JTY5 395 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 CBWD5Q5RIA9 395 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 CCNI2Q6ZMN8 369 aaPredicted RBP23.62■■□□□ 1.37
USP4-208ENST00000464168 PCED1AQ9H1Q7 454 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 TMEM245Q9H330 911 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 LRRC4Q9HBW1 653 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 SFMBT1Q9UHJ3 866 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 STOML2Q9UJZ1 356 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 TSPAN16Q9UKR8 245 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 LHX6Q9UPM6 363 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 FNDC3AQ9Y2H6 1198 aaKnown RBP23.62■■□□□ 1.37
USP4-208ENST00000464168 HBS1LQ9Y450 684 aaKnown RBP23.62■■□□□ 1.37
USP4-208ENST00000464168 SLCO1B1Q9Y6L6 691 aa23.62■■□□□ 1.37
USP4-208ENST00000464168 APC2O95996 2303 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 A0A1W2PQ27 194 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 A0A1W2PQ64 194 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 CETN3O15182 167 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 ZNF202O95125 648 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 CER1O95813 267 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 EPB41P11171 864 aaKnown RBP23.61■■□□□ 1.37
USP4-208ENST00000464168 MATKP42679 507 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 BCAT1P54687 386 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 NUMA1Q14980 2115 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 ADGRF1Q5T601 910 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 BSPRYQ5W0U4 402 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 IL27RAQ6UWB1 636 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 SETD7Q8WTS6 366 aaKnown RBP23.61■■□□□ 1.37
USP4-208ENST00000464168 CYB5D2Q8WUJ1 264 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 EDEM1Q92611 657 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 TM7SF3Q9NS93 570 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 APOBEC2Q9Y235 224 aaKnown RBP23.61■■□□□ 1.37
USP4-208ENST00000464168 COQ4Q9Y3A0 265 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms