RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CSNK2BP67870 215 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 RBP5P82980 135 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 HTD2P86397 168 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 CDK17Q00537 523 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 EXOSC9Q06265 439 aaKnown RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 BFSP1Q12934 665 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 COASYQ13057 564 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 BTG3Q14201 252 aaPredicted RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 PLS1Q14651 629 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 NOLC1Q14978 699 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS41-209ENST00000457055 CDSNQ15517 529 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 HADHQ16836 314 aaKnown RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 LRIT3Q3SXY7 679 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 AARDQ4LEZ3 155 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 DGKKQ5KSL6 1271 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 OR7E24Q6IFN5 339 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 DENND5AQ6IQ26 1287 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 TRMT10BQ6PF06 316 aaKnown RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 LBX2Q6XYB7 198 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 RHOUQ7L0Q8 258 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 CAND1Q86VP6 1230 aaKnown RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 COMTD1Q86VU5 262 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 OR2C3Q8N628 320 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 NIPA2Q8N8Q9 360 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 FAM71DQ8N9W8 422 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 C3orf20Q8ND61 904 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 GMCL1P1Q8NEA9 526 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 ETNPPLQ8TBG4 499 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 IGDCC4Q8TDY8 1250 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 DDI1Q8WTU0 396 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 ASB12Q8WXK4 309 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 ATP6V0A1Q93050 837 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 CNOT6LQ96LI5 555 aaKnown RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 CMTM3Q96MX0 182 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 CDK5RAP1Q96SZ6 601 aaKnown RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 SIKE1Q9BRV8 207 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 SYT17Q9BSW7 474 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 SPATA9Q9BWV2 254 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 KLC2Q9H0B6 622 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS41-209ENST00000457055 ADNPQ9H2P0 1102 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 STN1Q9H668 368 aaKnown RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 DENND2DQ9H6A0 471 aaPredicted RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 FAM204AQ9H8W3 233 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 DDX4Q9NQI0 724 aaKnown RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 KRT84Q9NSB2 600 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS41-209ENST00000457055 GPRC5BQ9NZH0 403 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 RGL1Q9NZL6 768 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 AKAP7Q9P0M2 348 aaPredicted RBP5.68□□□□□ -1.5
VPS41-209ENST00000457055 ACTR3BQ9P1U1 418 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 RPS6KA6Q9UK32 745 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 PCDHGB6Q9Y5F9 930 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 RREB1Q92766 1687 aa5.68□□□□□ -1.5
VPS41-209ENST00000457055 A0A087WV62 115 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 A0A1W2PPL8 197 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 TISP43B9A030 160 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 B9A039 149 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 H0YIV9 168 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 PSMA7O14818 248 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 LSM1O15116 133 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 SMAD6O43541 496 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 OR5F1O95221 314 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 PGM3O95394 542 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 MT-CO1P00395 513 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 CSTBP04080 98 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 UBTFL6P0CB48 400 aaPredicted RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 SRGAP2CP0DJJ0 459 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 GCFC2P16383 781 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 SDSP20132 328 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 FGFR4P22455 802 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 EEF1DP29692 281 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 EVI2BP34910 448 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 TRIM23P36406 574 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 RANBP1P43487 201 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 TUBP50607 506 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 PLCD1P51178 756 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 CASP5P51878 434 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 EPHB4P54760 987 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 MAP3K7CLP57077 242 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 ARF3P61204 181 aaPredicted RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 PPP2CBP62714 309 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 PPP2CAP67775 309 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 NOP14P78316 857 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 ARF1P84077 181 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 BMPR2Q13873 1038 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 CYLC2Q14093 348 aaPredicted RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 GALNT3Q14435 633 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 C2orf76Q3KRA6 126 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 Q3ZCU0 254 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 USP39Q53GS9 565 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 C1orf141Q5JVX7 400 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 RBM20Q5T481 1227 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 IFIT1BQ5T764 474 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 RNASEH2BQ5TBB1 312 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 CREB3L3Q68CJ9 461 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 PDPK2PQ6A1A2 396 aa5.67□□□□□ -1.5
VPS41-209ENST00000457055 TWF2Q6IBS0 349 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 MRM1Q6IN84 353 aaKnown RBP5.67□□□□□ -1.5
VPS41-209ENST00000457055 MIS18BP1Q6P0N0 1132 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms