RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CCNE2O96020 404 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 TFRCP02786 760 aaKnown RBP13.63□□□□□ -0.23
USP40-208ENST00000450966 CHKAP35790 457 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 SUZ12Q15022 739 aaKnown RBP13.63□□□□□ -0.23
USP40-208ENST00000450966 CDO1Q16878 200 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 C2CD6Q53TS8 623 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 XKR3Q5GH77 459 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 EIF3MQ7L2H7 374 aaKnown RBP13.63□□□□□ -0.23
USP40-208ENST00000450966 PPIL6Q8IXY8 311 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 ADGRF4Q8IZF3 695 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 ZHX1-C8orf76Q96EF9 292 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 DCDC2CA8MYV0 355 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 USP12O75317 370 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 PEX14O75381 377 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 NR3C1P04150 777 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 SUPT20HL2P0C7V6 817 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 IDO1P14902 403 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ERVK-9P63128 1117 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 C16orf86Q6ZW13 317 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 EFL1Q7Z2Z2 1120 aaKnown RBP13.62□□□□□ -0.23
USP40-208ENST00000450966 DEFB132Q7Z7B7 95 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 SLC13A5Q86YT5 568 aaPredicted RBP13.62□□□□□ -0.23
USP40-208ENST00000450966 XXYLT1Q8NBI6 393 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 CDC26Q8NHZ8 85 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 VMP1Q96GC9 406 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 SEMA4AQ9H3S1 761 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 SPTLC1O15269 473 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 BMP10O95393 424 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ATXN8OSP0DMR3 200 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 BGNP21810 368 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 PTENP60484 403 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ENPEPQ07075 957 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 PKN2Q16513 984 aaKnown RBP13.62□□□□□ -0.23
USP40-208ENST00000450966 QPCTQ16769 361 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ZNF699Q32M78 642 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ENOSF1Q7L5Y1 443 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 SLCO6A1Q86UG4 719 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 MTMR4Q9NYA4 1195 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP40-208ENST00000450966 DPP7Q9UHL4 492 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 MAD2L2Q9UI95 211 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 GPR75-ASB3A0A0A6YYF3 556 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 KRT87PA6NCN2 255 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 CYP2D6P10635 497 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 SPRP35270 261 aaPredicted RBP13.62□□□□□ -0.23
USP40-208ENST00000450966 STAT5BP51692 787 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 PPP4CP60510 307 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 DDR2Q16832 855 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ANO7Q6IWH7 933 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 FGD2Q7Z6J4 655 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ELMOD2Q8IZ81 293 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 GPC2Q8N158 579 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 SNX19Q92543 992 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 YME1L1Q96TA2 773 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 MAGEB5Q9BZ81 275 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 DPYSQ14117 519 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 SYCE2Q6PIF2 218 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 TAF8Q7Z7C8 310 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ZNF333Q96JL9 665 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 INTS2Q9H0H0 1204 aaKnown RBP13.62□□□□□ -0.23
USP40-208ENST00000450966 PHF24Q9UPV7 400 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 ILVBLA1L0T0 632 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 TTC23Q5W5X9 447 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 PLEKHH3Q7Z736 793 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 CHCHD4Q8N4Q1 142 aa13.62□□□□□ -0.23
USP40-208ENST00000450966 HTR3EA5X5Y0 456 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 A8MUI8 341 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 MAGEA10P43363 369 aaPredicted RBP13.61□□□□□ -0.23
USP40-208ENST00000450966 DGKDQ16760 1214 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 NECAB2Q7Z6G3 386 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 SGMS1Q86VZ5 419 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 ZFYVE1Q9HBF4 777 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 GABBR1Q9UBS5 961 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 STAP1Q9ULZ2 295 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 ABCG2Q9UNQ0 655 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 GSG1L2A8MUP6 293 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 STMND1H3BQB6 276 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 PRKD3O94806 890 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 RARAP10276 462 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 RALAP11233 206 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 RPL26P61254 145 aaKnown RBP13.61□□□□□ -0.23
USP40-208ENST00000450966 MRPS22P82650 360 aaKnown RBP13.61□□□□□ -0.23
USP40-208ENST00000450966 STILQ15468 1287 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 NRF1Q16656 503 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 UGP2Q16851 508 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 ZNF423Q2M1K9 1284 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 GARNL3Q5VVW2 1013 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 KIAA0408Q6ZU52 694 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 CREG2Q8IUH2 290 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 IFT43Q96FT9 208 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 UBXN6Q9BZV1 441 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 INTS13Q9NVM9 706 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 FAM53CQ9NYF3 392 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 KLHL8Q9P2G9 620 aaPredicted RBP13.61□□□□□ -0.23
USP40-208ENST00000450966 CEMIPQ8WUJ3 1361 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 ZSCAN5BA6NJL1 495 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 MEI4A8MW99 385 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 CENPBD1B2RD01 187 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 SNAP23O00161 211 aa13.61□□□□□ -0.23
USP40-208ENST00000450966 MYO1DO94832 1006 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms