RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ABHD11Q8NFV4 315 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 RP9Q8TA86 221 aaKnown RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 C3orf49Q96BT1 292 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 GCC1Q96CN9 775 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 DAZAP1Q96EP5 407 aaKnown RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 UBXN10Q96LJ8 280 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 EIF2AK1Q9BQI3 630 aaKnown RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 SH2D3AQ9BRG2 576 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 DDX23Q9BUQ8 820 aaKnown RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 FSD1LQ9BXM9 530 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 ELAC1Q9H777 363 aaKnown RBP4.02□□□□□ -1.77
VPS41-207ENST00000439468 FLRT1Q9NZU1 646 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 KCND3Q9UK17 655 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 GABRQQ9UN88 632 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 CNTN6Q9UQ52 1028 aa4.02□□□□□ -1.77
VPS41-207ENST00000439468 FNDC1Q4ZHG4 1894 aaPredicted RBP4.01□□□□□ -1.77
VPS41-207ENST00000439468 TISP43B9A030 160 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 H0Y3Z8 333 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 FAM155BO75949 473 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 AGR2O95994 175 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 PRR35P0CG20 571 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 NHLRC4P0CG21 123 aaPredicted RBP4.01□□□□□ -1.77
VPS41-207ENST00000439468 CD19P15391 556 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 RXRAP19793 462 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 KELP23276 732 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 ADD2P35612 726 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 DIO1P49895 249 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 TUBA4AP68366 448 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 HOXA4Q00056 320 aaPredicted RBP4.01□□□□□ -1.77
VPS41-207ENST00000439468 SEMA3BQ13214 749 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 PDCLQ13371 301 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 CSHL1Q14406 222 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 KCNJ12Q14500 433 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 CLCA4Q14CN2 919 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 RPS6KA2Q15349 733 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 LRRC24Q50LG9 513 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 RNASE12Q5GAN4 147 aaKnown RBP4.01□□□□□ -1.77
VPS41-207ENST00000439468 FAM90A2PQ658T7 463 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 ANKRD40Q6AI12 368 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 LVRNQ6Q4G3 990 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 CYP26C1Q6V0L0 522 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 SYT13Q7L8C5 426 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 SIRT6Q8N6T7 355 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 HMGB4Q8WW32 186 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 REPS1Q96D71 796 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 RSPRY1Q96DX4 576 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 RAB21Q9UL25 225 aa4.01□□□□□ -1.77
VPS41-207ENST00000439468 CCDC187A0A096LP49 1063 aa4□□□□□ -1.77
VPS41-207ENST00000439468 LOC105369274A0A096LPK9 316 aa4□□□□□ -1.77
VPS41-207ENST00000439468 LOC102723532A0A0G2JNH3 316 aa4□□□□□ -1.77
VPS41-207ENST00000439468 PRAMEF2O60811 474 aa4□□□□□ -1.77
VPS41-207ENST00000439468 MBPP02686 304 aaPredicted RBP4□□□□□ -1.77
VPS41-207ENST00000439468 PRKCBP05771 671 aa4□□□□□ -1.77
VPS41-207ENST00000439468 POLBP06746 335 aa4□□□□□ -1.77
VPS41-207ENST00000439468 HSD3B1P14060 373 aa4□□□□□ -1.77
VPS41-207ENST00000439468 CERS1P27544 350 aa4□□□□□ -1.77
VPS41-207ENST00000439468 CST5P28325 142 aaPredicted RBP4□□□□□ -1.77
VPS41-207ENST00000439468 CCT5P48643 541 aa4□□□□□ -1.77
VPS41-207ENST00000439468 RNASELQ05823 741 aaKnown RBP4□□□□□ -1.77
VPS41-207ENST00000439468 SF3A3Q12874 501 aaKnown RBP eCLIP4□□□□□ -1.77
VPS41-207ENST00000439468 LMAN2Q12907 356 aa4□□□□□ -1.77
VPS41-207ENST00000439468 DNASE1L3Q13609 305 aa4□□□□□ -1.77
VPS41-207ENST00000439468 TRIM60Q495X7 471 aa4□□□□□ -1.77
VPS41-207ENST00000439468 GALNTL6Q49A17 601 aa4□□□□□ -1.77
VPS41-207ENST00000439468 CERKLQ49MI3 558 aaPredicted RBP4□□□□□ -1.77
VPS41-207ENST00000439468 ZNF626Q68DY1 528 aa4□□□□□ -1.77
VPS41-207ENST00000439468 KIRREL2Q6UWL6 708 aa4□□□□□ -1.77
VPS41-207ENST00000439468 SYNE3Q6ZMZ3 975 aa4□□□□□ -1.77
VPS41-207ENST00000439468 ZNF66Q6ZN08 573 aa4□□□□□ -1.77
VPS41-207ENST00000439468 PTCHD4Q6ZW05 846 aa4□□□□□ -1.77
VPS41-207ENST00000439468 KRT27Q7Z3Y8 459 aa4□□□□□ -1.77
VPS41-207ENST00000439468 YTHDF3Q7Z739 585 aaKnown RBP4□□□□□ -1.77
VPS41-207ENST00000439468 TRABD2AQ86V40 505 aa4□□□□□ -1.77
VPS41-207ENST00000439468 TTC30AQ86WT1 665 aa4□□□□□ -1.77
VPS41-207ENST00000439468 RAB11FIP4Q86YS3 637 aa4□□□□□ -1.77
VPS41-207ENST00000439468 CNGA4Q8IV77 575 aa4□□□□□ -1.77
VPS41-207ENST00000439468 HERC6Q8IVU3 1022 aa4□□□□□ -1.77
VPS41-207ENST00000439468 OR4N4Q8N0Y3 316 aa4□□□□□ -1.77
VPS41-207ENST00000439468 WDR60Q8WVS4 1066 aa4□□□□□ -1.77
VPS41-207ENST00000439468 ZSCAN31Q96LW9 406 aaPredicted RBP4□□□□□ -1.77
VPS41-207ENST00000439468 ZNF778Q96MU6 729 aa4□□□□□ -1.77
VPS41-207ENST00000439468 EIF3CQ99613 913 aaKnown RBP4□□□□□ -1.77
VPS41-207ENST00000439468 NUDT22Q9BRQ3 303 aa4□□□□□ -1.77
VPS41-207ENST00000439468 CIPCQ9C0C6 399 aa4□□□□□ -1.77
VPS41-207ENST00000439468 CCDC134Q9H6E4 229 aa4□□□□□ -1.77
VPS41-207ENST00000439468 CHODLQ9H9P2 273 aa4□□□□□ -1.77
VPS41-207ENST00000439468 USP29Q9HBJ7 922 aa4□□□□□ -1.77
VPS41-207ENST00000439468 TFCP2L1Q9NZI6 479 aa4□□□□□ -1.77
VPS41-207ENST00000439468 ZNF70Q9UC06 446 aaPredicted RBP4□□□□□ -1.77
VPS41-207ENST00000439468 AMFRQ9UKV5 643 aa4□□□□□ -1.77
VPS41-207ENST00000439468 LZTS1Q9Y250 596 aa4□□□□□ -1.77
VPS41-207ENST00000439468 RCE1Q9Y256 329 aa4□□□□□ -1.77
VPS41-207ENST00000439468 RRN3P2A6NIE6 340 aa3.99□□□□□ -1.77
VPS41-207ENST00000439468 AGAP5A6NIR3 686 aa3.99□□□□□ -1.77
VPS41-207ENST00000439468 A8MVJ9 347 aa3.99□□□□□ -1.77
VPS41-207ENST00000439468 PRRT4C9JH25 899 aa3.99□□□□□ -1.77
VPS41-207ENST00000439468 E7EVH7 732 aa3.99□□□□□ -1.77
VPS41-207ENST00000439468 INO80B-WBP1J3KQ70 363 aa3.99□□□□□ -1.77
VPS41-207ENST00000439468 IRAK2O43187 625 aa3.99□□□□□ -1.77
VPS41-207ENST00000439468 KAT7O95251 611 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms