RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TFB1MQ8WVM0 346 aaKnown RBP13.82□□□□□ -0.2
VPS54-203ENST00000409558 SLC44A1Q8WWI5 657 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 HTR3CQ8WXA8 447 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 FAM136AQ96C01 138 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 FOXP3Q9BZS1 431 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 STARD13Q9Y3M8 1113 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 C2CD2Q9Y426 696 aa13.82□□□□□ -0.2
VPS54-203ENST00000409558 NEMP1O14524 444 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 EPHB1P54762 984 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 E2F7Q96AV8 911 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 ZNF669Q96BR6 464 aaPredicted RBP13.81□□□□□ -0.2
VPS54-203ENST00000409558 SGF29Q96ES7 293 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 FLRT1Q9NZU1 646 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 SENP1Q9P0U3 644 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 KCNH4Q9UQ05 1017 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 DFFAO00273 331 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 PRPF4O43172 522 aaKnown RBP eCLIP13.81□□□□□ -0.2
VPS54-203ENST00000409558 AP1G2O75843 785 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 T-ENOLP0DO92 83 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 GM2AP17900 193 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 PEX19P40855 299 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 GRM5P41594 1212 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 TAF6P49848 677 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 SNX17Q15036 470 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 GNASQ5JWF2 1037 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 TTC39BQ5VTQ0 682 aaPredicted RBP13.81□□□□□ -0.2
VPS54-203ENST00000409558 PLEKHH3Q7Z736 793 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 B3GALNT2Q8NCR0 500 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 P2RY11Q96G91 374 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 PTPN18Q99952 460 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 C20orf27Q9GZN8 174 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 POPDC2Q9HBU9 364 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 PCDH10Q9P2E7 1040 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 IPPQ9Y573 584 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 YJEFN3A6XGL0 299 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 B2RBV5 119 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 E7ENQ6 273 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 EEF2KO00418 725 aaKnown RBP13.81□□□□□ -0.2
VPS54-203ENST00000409558 NEBLO76041 1014 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 APOEP02649 317 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 GSTA1P08263 222 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 TYK2P29597 1187 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 ARPP19P56211 112 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 MFSD10Q14728 455 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 GALNTL6Q49A17 601 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 DUSP28Q4G0W2 176 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 FAM219BQ5XKK7 198 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 APOPT1Q96IL0 206 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 SNX27Q96L92 541 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 SYBUQ9NX95 663 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 ZFATQ9P243 1243 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 FCHO1O14526 889 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 SCNN1GP51170 649 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 CACNA2D1P54289 1103 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 BCAT1P54687 386 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 GPRIN1Q7Z2K8 1008 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 SHKBP1Q8TBC3 707 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 GPR152Q8TDT2 470 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 KBTBD7Q8WVZ9 684 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 RSRC1Q96IZ7 334 aaKnown RBP13.81□□□□□ -0.2
VPS54-203ENST00000409558 AGAP2Q99490 1192 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 NOP53Q9NZM5 478 aaKnown RBP13.81□□□□□ -0.2
VPS54-203ENST00000409558 KANSL3Q9P2N6 904 aa13.81□□□□□ -0.2
VPS54-203ENST00000409558 GOLGA8QA0A0J9YX86 632 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 GOLGA8OA6NCC3 632 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 GOLGA8NF8WBI6 632 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 TPP1O14773 563 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 BRCC3P46736 316 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 LILRA4P59901 499 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 KPNB1Q14974 876 aaKnown RBP13.8□□□□□ -0.2
VPS54-203ENST00000409558 HSP90AA5PQ58FG0 334 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 RNF43Q68DV7 783 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 RAPH1Q70E73 1250 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 RASSF3Q86WH2 238 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 CFAP61Q8NHU2 1237 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 RNF139Q8WU17 664 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 TTC1Q99614 292 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 THTPAQ9BU02 230 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 ABHD16BQ9H3Z7 469 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 DENND2DQ9H6A0 471 aaPredicted RBP13.8□□□□□ -0.2
VPS54-203ENST00000409558 PIGVQ9NUD9 493 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 UBQLN1Q9UMX0 589 aaKnown RBP13.8□□□□□ -0.2
VPS54-203ENST00000409558 FNDC3AQ9Y2H6 1198 aaKnown RBP13.8□□□□□ -0.2
VPS54-203ENST00000409558 TTC3P53804 2025 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 B3GAT3O94766 335 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 RASA2Q15283 850 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 N4BP2L1Q5TBK1 243 aaPredicted RBP13.8□□□□□ -0.2
VPS54-203ENST00000409558 CDKL3Q8IVW4 592 aaPredicted RBP13.8□□□□□ -0.2
VPS54-203ENST00000409558 GRAMD1AQ96CP6 724 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 VTA1Q9NP79 307 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 KRT38O76015 456 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 OR4Q2P0C623 313 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 DARSP14868 501 aaKnown RBP13.8□□□□□ -0.2
VPS54-203ENST00000409558 CLCNKBP51801 687 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 SLC45A4Q5BKX6 768 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 CERCAMQ5T4B2 595 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 LGSNQ5TDP6 509 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 ARHGEF3Q9NR81 526 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 ACTL7BQ9Y614 415 aa13.8□□□□□ -0.2
VPS54-203ENST00000409558 ITM2AO43736 263 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms