RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 OBSL1O75147 1896 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 C2orf16Q68DN1 1984 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 KCNK3O14649 394 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 DDX3YO15523 660 aaKnown RBP18.74■□□□□ 0.59
SDC1-203ENST00000403076 AIF1P55008 147 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 KRT81Q14533 505 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 NPAS3Q8IXF0 933 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 SMRP1Q8NCR6 262 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 TEKT4Q8WW24 435 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 FGF13Q92913 245 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 ZSWIM3Q96MP5 696 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 NECTIN4Q96NY8 510 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 SIK2Q9H0K1 926 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 TMPRSS4Q9NRS4 437 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.74■□□□□ 0.592e-6■■■□□ 14.8
SDC1-203ENST00000403076 ARHGEF38Q9NXL2 777 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 LSM7Q9UK45 103 aaKnown RBP18.74■□□□□ 0.59
SDC1-203ENST00000403076 DENND4CQ5VZ89 1909 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 LRRD1A4D1F6 860 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 PAGE1O75459 146 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 STC2O76061 302 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 IGLV3-27P01718 113 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 GBP2P32456 591 aaPredicted RBP18.74■□□□□ 0.59
SDC1-203ENST00000403076 CDH6P55285 790 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 CYP4V2Q6ZWL3 525 aaPredicted RBP18.74■□□□□ 0.59
SDC1-203ENST00000403076 DDX42Q86XP3 938 aaKnown RBP eCLIP18.74■□□□□ 0.59
SDC1-203ENST00000403076 CCDC50Q8IVM0 306 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 ARID3BQ8IVW6 561 aaPredicted RBP18.74■□□□□ 0.59
SDC1-203ENST00000403076 ZSCAN18Q8TBC5 510 aaPredicted RBP18.74■□□□□ 0.59
SDC1-203ENST00000403076 ZFRQ96KR1 1074 aaKnown RBP18.74■□□□□ 0.59
SDC1-203ENST00000403076 BTN2A3PQ96KV6 586 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 DCLK3Q9C098 648 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 TDP1Q9NUW8 608 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 GDE1Q9NZC3 331 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 CFAP97Q9P2B7 532 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 ARHGAP26Q9UNA1 814 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 SH3BP1Q9Y3L3 701 aa18.74■□□□□ 0.59
SDC1-203ENST00000403076 USP15Q9Y4E8 981 aaPredicted RBP18.74■□□□□ 0.59
SDC1-203ENST00000403076 KCNU1A8MYU2 1149 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 PI4K2BG5E9Z4 385 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 ZRANB2O95218 330 aaKnown RBP eCLIP18.73■□□□□ 0.59
SDC1-203ENST00000403076 CORO1AP31146 461 aaKnown RBP18.73■□□□□ 0.59
SDC1-203ENST00000403076 CETN2P41208 172 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 SLC11A2P49281 568 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 PEX5P50542 639 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 MTA1Q13330 715 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 CA9Q16790 459 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 PPP6R3Q5H9R7 873 aaPredicted RBP18.73■□□□□ 0.59
SDC1-203ENST00000403076 PSTKQ8IV42 348 aaKnown RBP18.73■□□□□ 0.59
SDC1-203ENST00000403076 DENND1CQ8IV53 801 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 MAP7D3Q8IWC1 876 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 KATNAL2Q8IYT4 538 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 KIF18AQ8NI77 898 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 SH3RF2Q8TEC5 729 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 ALG3Q92685 438 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 USP13Q92995 863 aaPredicted RBP18.73■□□□□ 0.59
SDC1-203ENST00000403076 HLA-CQ95604 372 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 RNF25Q96BH1 459 aaPredicted RBP18.73■□□□□ 0.59
SDC1-203ENST00000403076 POMKQ9H5K3 350 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 ANLNQ9NQW6 1124 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 CDH7Q9ULB5 785 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 CDH23Q9H251 3354 aa18.73■□□□□ 0.59
SDC1-203ENST00000403076 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.72■□□□□ 0.59
SDC1-203ENST00000403076 LEFTY2O00292 366 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 CXCR5P32302 372 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 SCAPQ12770 1279 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 RCOR2Q8IZ40 523 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 PYROXD2Q8N2H3 581 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 EXD1Q8NHP7 514 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 WBP2Q969T9 261 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 RBM41Q96IZ5 413 aaKnown RBP18.72■□□□□ 0.59
SDC1-203ENST00000403076 HAPLN3Q96S86 360 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 CALN1Q9BXU9 219 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 MAGEB5Q9BZ81 275 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 CCL26Q9Y258 94 aa18.72■□□□□ 0.59
SDC1-203ENST00000403076 FANCGO15287 622 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 CREB3O43889 395 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 ACSL4O60488 711 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 KDELR1P24390 212 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 ZNF211Q13398 564 aaPredicted RBP18.71■□□□□ 0.59
SDC1-203ENST00000403076 PDK2Q15119 407 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 SEL1L2Q5TEA6 688 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 PAPD7Q5XG87 772 aaKnown RBP18.71■□□□□ 0.59
SDC1-203ENST00000403076 POTEHQ6S545 545 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 RAPGEF5Q92565 580 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 SMARCD2Q92925 531 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 KCTD15Q96SI1 283 aaPredicted RBP18.71■□□□□ 0.59
SDC1-203ENST00000403076 OSBPL9Q96SU4 736 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 OR12D3Q9UGF7 316 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 XPO7Q9UIA9 1087 aaKnown RBP18.71■□□□□ 0.59
SDC1-203ENST00000403076 SNX12Q9UMY4 172 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 SAR1BQ9Y6B6 198 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 BRWD1Q9NSI6 2320 aa18.71■□□□□ 0.59
SDC1-203ENST00000403076 I6L893 689 aaPredicted RBP18.7■□□□□ 0.58
SDC1-203ENST00000403076 SCAMP3O14828 347 aaKnown RBP18.7■□□□□ 0.58
SDC1-203ENST00000403076 CEP104O60308 925 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 PRAMEF12O95522 483 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 PYGMP11217 842 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 TCP1P17987 556 aaKnown RBP18.7■□□□□ 0.58
SDC1-203ENST00000403076 L1CAMP32004 1257 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms