RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 MTSS1O43312 755 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 AVILO75366 819 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MICAL2O94851 1124 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 SERPINE1P05121 402 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 ERVK-10P10266 1014 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 CLK1P49759 484 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MAPK10P53779 464 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 AGAP9Q5VTM2 703 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PTRHD1Q6GMV3 140 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PTAR1Q7Z6K3 402 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 OTULINQ96BN8 352 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 KREMEN1Q96MU8 473 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 ZNF184Q99676 751 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 C17orf80Q9BSJ5 609 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MECRQ9BV79 373 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 FRMD8P1Q9BZ68 369 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 COG4Q9H9E3 785 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PNMA8BQ9ULN7 279 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 F8W8V4 182 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PSMD3O43242 534 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PSMG1O95456 288 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 HSPA1AP0DMV8 641 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 HSPA1BP0DMV9 641 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 INSRRP14616 1297 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 AKAP5P24588 427 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PEX5P50542 639 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 FKBP1AP62942 108 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MRPS15P82914 257 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 POU4F1Q01851 419 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 LAMB3Q13751 1172 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MGAT5BQ3V5L5 792 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 OTUD3Q5T2D3 398 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MIER2Q8N344 545 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 TMEM161BQ8NDZ6 487 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 RPRD1AQ96P16 312 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 LMCD1Q9NZU5 365 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MYH4Q9Y623 1939 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 FSCN2O14926 492 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 LIASO43766 372 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 TRIM13O60858 407 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 TADA2AO75478 443 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 BAIAP3O94812 1187 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 VAPBO95292 243 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MAPTP10636 758 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 HLA-DPA1P20036 260 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 GP5P40197 560 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 DDX39BQ13838 428 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 KRT33BQ14525 404 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 C7orf43Q8WVR3 580 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PPP2R3CQ969Q6 453 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 SLITRK1Q96PX8 696 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 CAMKK2Q96RR4 588 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 SEPHS2Q99611 448 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 FICDQ9BVA6 458 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 GPAMQ9HCL2 828 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 SNTG2Q9NY99 539 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 FAM53CQ9NYF3 392 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 NCKIPSDQ9NZQ3 722 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 CCDC167Q9P0B6 97 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 COG5Q9UP83 839 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 CNTRLQ7Z7A1 2325 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 C2orf71A6NGG8 1288 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 C16orf96A6NNT2 1141 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 APOC4-APOC2K7ER74 178 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 LGR5O75473 907 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 ANXA9O76027 345 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 SNUPNO95149 360 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PGM3O95394 542 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 APOC2P02655 101 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 CYP1A2P05177 515 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 ATP6V1E1P36543 226 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 TMED10P49755 219 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 NAGLUP54802 743 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 TAF1CQ15572 869 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 MOB2Q70IA6 237 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PLD3Q8IV08 490 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 BRSK2Q8IWQ3 736 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 HTR3CQ8WXA8 447 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 FAM162AQ96A26 154 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 DTNBP1Q96EV8 351 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 TMEM79Q9BSE2 394 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 CATSPERBQ9H7T0 1116 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 PAIP2BQ9ULR5 123 aaKnown RBP11.04□□□□□ -0.64
CCDC40-204ENST00000397545 C2CD2Q9Y426 696 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 ZC3H4Q9UPT8 1303 aaKnown RBP11.03□□□□□ -0.64
CCDC40-204ENST00000397545 IGLV3-22A0A075B6J6 115 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 LINC00854A0A1B0GVQ3 168 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 TMEM247A6NEH6 219 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 RNF103O00237 685 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 CYB561D2O14569 222 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 TNPO2O14787 897 aaKnown RBP11.03□□□□□ -0.64
CCDC40-204ENST00000397545 TBC1D4O60343 1298 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 DAB1O75553 588 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 GLRA2P23416 452 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 HOXD13P35453 343 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 BCAT1P54687 386 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 ZNF268Q14587 947 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-204ENST00000397545 PDK4Q16654 411 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 SLC44A4Q53GD3 710 aa11.03□□□□□ -0.64
CCDC40-204ENST00000397545 GNASQ5JWF2 1037 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms