RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 EFCAB3Q8N7B9 438 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 ERAP1Q9NZ08 941 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 HPSEQ9Y251 543 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 ZMPSTE24O75844 475 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 TTLL4Q14679 1199 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 LPIN1Q14693 890 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 PKN1Q16512 942 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 ZNF276Q8N554 614 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 LRRC17Q8N6Y2 441 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 WBP11Q9Y2W2 641 aaKnown RBP12.13□□□□□ -0.47
SYNPO-202ENST00000394243 CES2O00748 559 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 VPS26AO75436 327 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 ADAM17P78536 824 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 LDHDQ86WU2 507 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 PCDH12Q9NPG4 1184 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 ANAPC2Q9UJX6 822 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 SHOC2Q9UQ13 582 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 TBX3O15119 743 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 MTRF1O75570 445 aaKnown RBP12.13□□□□□ -0.47
SYNPO-202ENST00000394243 TPBGLP0DKB5 382 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 GRIA3P42263 894 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 TTLL9Q3SXZ7 439 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 EGFLAMQ63HQ2 1017 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 CDC73Q6P1J9 531 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 FNDC5Q8NAU1 212 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 HTRA1Q92743 480 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 ZHX1-C8orf76Q96EF9 292 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 ACOX2Q99424 681 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 DPY30Q9C005 99 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 TIMMDC1Q9NPL8 285 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 GPATCH2LQ9NWQ4 482 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 PADI4Q9UM07 663 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 DPPA5A6NC42 116 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 RPA1P27694 616 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 DSG3P32926 999 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 STAT5BP51692 787 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 SNRPFP62306 86 aaKnown RBP12.13□□□□□ -0.47
SYNPO-202ENST00000394243 GPSM2P81274 684 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 CD302Q8IX05 232 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 MICALL2Q8IY33 904 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 MLPHQ9BV36 600 aaPredicted RBP12.13□□□□□ -0.47
SYNPO-202ENST00000394243 USP18Q9UMW8 372 aa12.13□□□□□ -0.47
SYNPO-202ENST00000394243 CNTNAP5Q8WYK1 1306 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 KBTBD13C9JR72 458 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ANXA11P50995 505 aaKnown RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 CCNG1P51959 295 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PDK2Q15119 407 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 SCARA3Q6AZY7 606 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 NMRK2Q9NPI5 230 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 GSTK1Q9Y2Q3 226 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 GNG14A0A1W2PPG7 69 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 TMCC2O75069 709 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ARF5P84085 180 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 GRIK3Q13003 919 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 FAM43BQ6ZT52 329 aaPredicted RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PROX1Q92786 737 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 COX4I2Q96KJ9 171 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 TEKT5Q96M29 485 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PHACTR1Q9C0D0 580 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ING3Q9NXR8 418 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 MED14O60244 1454 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 M0QYT0 321 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PLOD3O60568 738 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PROSCO94903 275 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 GZMAP12544 262 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 GRK3P35626 688 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 FOXO4P98177 505 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 GRTP1Q5TC63 336 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PGBD2Q6P3X8 592 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 B3GALT6Q96L58 329 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 WDR12Q9GZL7 423 aaKnown RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 FBXO28Q9NVF7 368 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 CDH9Q9ULB4 789 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 C2orf81A6NN90 581 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 RARAP10276 462 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 NELFEP18615 380 aaKnown RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 MAGP20916 626 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 FGFR2P21802 821 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 SLC26A3P40879 764 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ARPC4P59998 168 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 TSC22D1Q15714 1073 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 DNAJC14Q6Y2X3 702 aaPredicted RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ZNF671Q8TAW3 534 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 CLK4Q9HAZ1 481 aaKnown RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PNPLA3Q9NST1 481 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 AP4B1Q9Y6B7 739 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 TFECO14948 347 aaPredicted RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 FAM86B2P0C5J1 330 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 TRAP1Q12931 704 aaKnown RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ORC1Q13415 861 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ZFP69Q49AA0 526 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 XKR3Q5GH77 459 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 SPDYCQ5MJ68 293 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 SDE2Q6IQ49 451 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ACTL9Q8TC94 416 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 MARK4Q96L34 752 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 LRRC4BQ9NT99 713 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PIN4Q9Y237 131 aaKnown RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ADGRL3Q9HAR2 1447 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms