RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 BCLAF3A2AJT9 711 aaKnown RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TRPC5OSA6NMA1 111 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 M0QYV0 167 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 FCHO1O14526 889 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 CASKO14936 926 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ARHGEF15O94989 841 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 CPNE6O95741 557 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TGM2P21980 687 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 RXRBP28702 533 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ADSSP30520 456 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 SULT1E1P49888 294 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PKP1Q13835 747 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF827Q17R98 1081 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TRIM16LQ309B1 348 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 FOXP4Q8IVH2 680 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 LRRC8AQ8IWT6 810 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 OR10H5Q8NGA6 315 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 AKAP1Q92667 903 aaKnown RBP eCLIP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ASPNQ9BXN1 380 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 C6orf62Q9GZU0 229 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 NKIRAS2Q9NYR9 191 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 NOP53Q9NZM5 478 aaKnown RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM63CQ9P1W3 806 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ARID1BQ8NFD5 2236 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 KDM2BQ8NHM5 1336 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 UBE2QL1A1L167 161 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 DPPA5A6NC42 116 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 GATBO75879 557 aaKnown RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 SLC16A8O95907 504 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 RARBP10826 455 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 GSTM5P46439 218 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 MRPS22P82650 360 aaKnown RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PMPCAQ10713 525 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 SPIDRQ14159 915 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TOR1AIP1Q5JTV8 583 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ERICH5Q6P6B1 374 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 CASP12Q6UXS9 341 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 CHST4Q8NCG5 386 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PIGOQ8TEQ8 1089 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 SETD7Q8WTS6 366 aaKnown RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 CNDP1Q96KN2 507 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ZSCAN5AQ9BUG6 496 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM121BQ9BXQ6 578 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 GCNT4Q9P109 453 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ENTPD4Q9Y227 616 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PCDHB12Q9Y5F1 795 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PCDHGA5Q9Y5G8 931 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PCDHA13Q9Y5I0 950 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TRIM49BA6NDI0 452 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TRIM49D1C9J1S8 452 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 KATNA1O75449 491 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 MBL2P11226 248 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 COX4I1P13073 169 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 FDPSP14324 419 aaKnown RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 RAG1P15918 1043 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 NPR2P20594 1047 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 DRD4P21917 467 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 RGS19P49795 217 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 GPC3P51654 580 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 CRY2Q49AN0 593 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 CCNYL2Q5T2Q4 361 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PCNX4Q63HM2 1172 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 DPY19L4Q7Z388 723 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF366Q8N895 744 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 BOLLQ8N9W6 283 aaKnown RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 LPCAT1Q8NF37 534 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 OR10G6Q8NH81 332 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 GPT2Q8TD30 523 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ATP6V1G3Q96LB4 118 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PRICKLE1Q96MT3 831 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 GCOM2Q9BZD3 368 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 HIPK2Q9H2X6 1198 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 C10orf88Q9H8K7 445 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 MLXIPLQ9NP71 852 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ASNSD1Q9NWL6 643 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 TOR4AQ9NXH8 423 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 MAT2BQ9NZL9 334 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF221Q9UK13 617 aa4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PRRC2BQ5JSZ5 2229 aaKnown RBP4.75□□□□□ -1.65
SCN1A-202ENST00000375405 PTPN23Q9H3S7 1636 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 GSAPA4D1B5 854 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 C2orf72A6NCS6 295 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF891A8MT65 544 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 GDF11O95390 407 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 POMCP01189 267 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 NDUFV1P49821 464 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CENPCQ03188 943 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CTC1Q2NKJ3 1217 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 RNASE12Q5GAN4 147 aaKnown RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 NKAPLQ5M9Q1 402 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 BROXQ5VW32 411 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 LMBRD2Q68DH5 695 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 UBE2J2Q8N2K1 259 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 KCNK16Q96T55 309 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CYP26B1Q9NR63 512 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CDK13Q14004 1512 aaKnown RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 FGD5Q6ZNL6 1462 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 DAPK1P53355 1430 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms