RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 RSAD2Q8WXG1 361 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 FGF13Q92913 245 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 ZNF707Q96C28 371 aaPredicted RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 CARD6Q9BX69 1037 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 MAK16Q9BXY0 300 aaKnown RBP9.56□□□□□ -0.88
USP4-202ENST00000351842 EPC1Q9H2F5 836 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 PRO3102Q9H379 93 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 BCCIPQ9P287 314 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP4-202ENST00000351842 DNMT3LQ9UJW3 386 aa9.56□□□□□ -0.88
USP4-202ENST00000351842 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP4-202ENST00000351842 MYO16Q9Y6X6 1858 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 DAB1O75553 588 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 APOEP02649 317 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 FAM163BP0C2L3 166 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 RDXP35241 583 aaKnown RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 KCNJ1P48048 391 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 HARS2P49590 506 aaKnown RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 TNK2Q07912 1038 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 C2orf54Q08AI8 447 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 EFHC2Q5JST6 749 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 HABP4Q5JVS0 413 aaKnown RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 PPP1R15BQ5SWA1 713 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 RHOT1Q8IXI2 618 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 SPATA18Q8TC71 538 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 SH3RF2Q8TEC5 729 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 C2orf15Q8WU43 125 aaKnown RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 FCRL2Q96LA5 508 aaPredicted RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 OSBPL9Q96SU4 736 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 LINC00597Q9H2U6 94 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 IL21Q9HBE4 155 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 SEPT10Q9P0V9 454 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 OR12D3Q9UGF7 316 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 INTUQ9ULD6 942 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 JRKLQ9Y4A0 524 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 PLXNA3P51805 1871 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 TCRBV5S1A1TA0A578 114 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 IFNB1P01574 187 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 CCR1P32246 355 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 RWDD2BP57060 319 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 DCAF12L1Q5VU92 463 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 OTUD1Q5VV17 481 aaPredicted RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 PM20D1Q6GTS8 502 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 C14orf80Q86SX3 495 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 RNF10Q8N5U6 811 aaKnown RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 HERPUD2Q9BSE4 406 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 RPP25Q9BUL9 199 aaKnown RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 DDX23Q9BUQ8 820 aaKnown RBP9.55□□□□□ -0.88
USP4-202ENST00000351842 L2HGDHQ9H9P8 463 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 NR2E1Q9Y466 385 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 LAMA1P25391 3075 aa9.55□□□□□ -0.88
USP4-202ENST00000351842 TRAV19A0A0A6YYK7 116 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 FSCN2O14926 492 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 ASGR2P07307 311 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 FSHRP23945 695 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 SEL1L2Q5TEA6 688 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 POTEHQ6S545 545 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 ZDHHC17Q8IUH5 632 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 LGI2Q8N0V4 545 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 CCNYQ8ND76 341 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 MYEOVQ96EZ4 313 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 CCDC114Q96M63 670 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 NPY6RQ99463 290 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 SPON2Q9BUD6 331 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 POMKQ9H5K3 350 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 ETNK2Q9NVF9 386 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 TRIM24O15164 1050 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 IRAK2O43187 625 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 CST8O60676 142 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 F11P03951 625 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 KLKB1P03952 638 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 GBP1P32455 592 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 TPI1P60174 286 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 NAA30Q147X3 362 aaPredicted RBP9.54□□□□□ -0.88
USP4-202ENST00000351842 ARHGAP15Q53QZ3 475 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 TEX35Q5T0J7 233 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 ELMSAN1Q6PJG2 1045 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 CACUL1Q86Y37 369 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 BBS7Q8IWZ6 715 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 MNS1Q8NEH6 495 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 DDI1Q8WTU0 396 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 SPATA17Q96L03 361 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 FAM124BQ9H5Z6 455 aaPredicted RBP9.54□□□□□ -0.88
USP4-202ENST00000351842 SFXN1Q9H9B4 322 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 CLEC1BQ9P126 229 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 UXTQ9UBK9 157 aaPredicted RBP9.54□□□□□ -0.88
USP4-202ENST00000351842 CARNS1A5YM72 827 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 DFFAO00273 331 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 ARL13BQ3SXY8 428 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 MEI1Q5TIA1 1274 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 TMC8Q8IU68 726 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 PAF1Q8N7H5 531 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 RIN3Q8TB24 985 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 SERPINB11Q96P15 392 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 DDX47Q9H0S4 455 aaKnown RBP9.54□□□□□ -0.88
USP4-202ENST00000351842 EBF3Q9H4W6 596 aa9.54□□□□□ -0.88
USP4-202ENST00000351842 PDE2AO00408 941 aaPredicted RBP9.53□□□□□ -0.88
USP4-202ENST00000351842 EEF2KO00418 725 aaKnown RBP9.53□□□□□ -0.88
USP4-202ENST00000351842 CNTN5O94779 1100 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 RHOXF2BP0C7M4 288 aa9.53□□□□□ -0.88
USP4-202ENST00000351842 CDC25CP30307 473 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms