RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DGKQP52824 942 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 MESDQ14696 234 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 TEAD2Q15562 447 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 KBTBD12Q3ZCT8 623 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 CLEC1AQ8NC01 280 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SLC26A7Q8TE54 656 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 BORCS6Q96GS4 357 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 TM6SF1Q9BZW5 370 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.67□□□□□ -1.026e-6■■□□□ 13.9
HMGB1-203ENST00000341423 SNX7Q9UNH6 387 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 YIPF1Q9Y548 306 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 PCDHAC2Q9Y5I4 1007 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 NRKQ7Z2Y5 1582 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 GOLGA8TH3BQL2 631 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ARIH2O95376 493 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 CHRNA1P02708 482 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 BASP1P80723 227 aaKnown RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 CYP4F8P98187 520 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 RUNX3Q13761 415 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 PCSK7Q16549 785 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SPATA24Q86W54 205 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SNX31Q8N9S9 440 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 BBOF1Q8ND07 529 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 P2RX5Q93086 422 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 RGS18Q9NS28 235 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 HSPBP1Q9NZL4 362 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 PISDQ9UG56 409 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 F5H423 210 aaPredicted RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 QSOX1O00391 747 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 PIK3R2O00459 728 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 CHRNA3P32297 505 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 MNAT1P51948 309 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 FNBP1LQ5T0N5 605 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 FBXO39Q8N4B4 442 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 DTWD2Q8NBA8 298 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 C11orf70Q9BRQ4 267 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 TRIM9Q9C026 710 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 RBSNQ9H1K0 784 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 CDHR5Q9HBB8 845 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 PLK2Q9NYY3 685 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 GTF3C4Q9UKN8 822 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 DCDC2BA2VCK2 349 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 H0YHG0 523 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 CD63P08962 238 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 NUDT1P36639 197 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 CSE1LP55060 971 aaKnown RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 KCNJ2P63252 427 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 ZCCHC9Q8N567 271 aaKnown RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 JSRP1Q96MG2 331 aaPredicted RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 MAP3K14Q99558 947 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 ZDHHC5Q9C0B5 715 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 DUSP10Q9Y6W6 482 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 GOLGA4Q13439 2230 aaKnown RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 LAMC1P11047 1609 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 A8MU76 341 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 PMPCBO75439 489 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 CHRM3P20309 590 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 ACTR1BP42025 376 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 MRE11P49959 708 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 ACTR1AP61163 376 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 ZNF200P98182 395 aaPredicted RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 BST2Q10589 180 aaKnown RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 TMCO4Q5TGY1 634 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 WSCD1Q658N2 575 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 GTSE1Q9NYZ3 720 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 HYOU1Q9Y4L1 999 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 VDRP11473 427 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 NTSR1P30989 418 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 CASQ1P31415 396 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 SREBF1P36956 1147 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 PBX3P40426 434 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 CASP2P42575 452 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 TMEM240Q5SV17 173 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 CERCAMQ5T4B2 595 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 ANKRD54Q6NXT1 300 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 ZPBP2Q6X784 338 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 ARID3BQ8IVW6 561 aaPredicted RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 GSPT2Q8IYD1 628 aaKnown RBP8.66□□□□□ -1.02
HMGB1-203ENST00000341423 RIT1Q92963 219 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 FAM167BQ9BTA0 163 aa8.66□□□□□ -1.02
HMGB1-203ENST00000341423 C3P01024 1663 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 TRBV23OR9-2A0A075B6M9 112 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 DUX1O43812 170 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 CCNDBP1O95273 360 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 MMP1P03956 469 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 SMSP52788 366 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 MTX1Q13505 466 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 SNRNP35Q16560 246 aaKnown RBP8.65□□□□□ -1.02
HMGB1-203ENST00000341423 SGCBQ16585 318 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 DDR2Q16832 855 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 PIK3R6Q5UE93 754 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ENPP7Q6UWV6 458 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 SEC14L1Q92503 715 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 JADE3Q92613 823 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 GTPBP3Q969Y2 492 aaKnown RBP8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ACOX2Q99424 681 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 RHBGQ9H310 441 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ALG2Q9H553 416 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 RPS6KB2Q9UBS0 482 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 MORC2Q9Y6X9 1032 aaPredicted RBP8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms