RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 UBR3Q6ZT12 1888 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 H2AFYO75367 372 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 ATP1A2P50993 1020 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 USP10Q14694 798 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 PPP1R15BQ5SWA1 713 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 ARMC12Q5T9G4 340 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 TRMT10CQ7L0Y3 403 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 EPM2AIP1Q7L775 607 aaPredicted RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 SNX31Q8N9S9 440 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 GPR152Q8TDT2 470 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 PLD4Q96BZ4 506 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 STAMBPL1Q96FJ0 436 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 TRMT6Q9UJA5 497 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 SLC39A10Q9ULF5 831 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 JCHAINP01591 159 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 FAM163BP0C2L3 166 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 OR4Q2P0C623 313 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 MMP13P45452 471 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 TAF10Q12962 218 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 EIF2B5Q13144 721 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 GRM3Q14832 879 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 OTOP3Q7RTS5 596 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 CFAP61Q8NHU2 1237 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 OR8D1Q8WZ84 308 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 ARHGEF2Q92974 986 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 RAB3IPQ96QF0 476 aaPredicted RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 PTPN18Q99952 460 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 C16orf70Q9BSU1 422 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 ZFP14Q9HCL3 533 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 GMIPQ9P107 970 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 SLC13A4Q9UKG4 626 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 MEI4A8MW99 385 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 SRP72O76094 671 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 MTFR1Q15390 333 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 CACNA2D3Q8IZS8 1091 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 OR12D3Q9UGF7 316 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 SUN2Q9UH99 717 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 NOVA2Q9UNW9 492 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 NEDD8-MDP1E9PL57 170 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 KPNA3O00505 521 aaPredicted RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 GSTA4O15217 222 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 GFAPP14136 432 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 LAMB2P55268 1798 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 LILRA4P59901 499 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 KIF19Q2TAC6 998 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 NLRP9Q7RTR0 991 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 C1orf127Q8N9H9 656 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 FUBP3Q96I24 572 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP54-201ENST00000339859 RBM15Q96T37 977 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP54-201ENST00000339859 PACSIN1Q9BY11 444 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 POLR1EQ9GZS1 481 aaKnown RBP10.45□□□□□ -0.74
USP54-201ENST00000339859 CD274Q9NZQ7 290 aa10.45□□□□□ -0.74
USP54-201ENST00000339859 DNAJC25-GNG10A0A024R161 153 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 SLC5A3P53794 718 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 C21orf59P57076 290 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 JAMLQ86YT9 394 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 EPS8L1Q8TE68 723 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 SUSD3Q96L08 255 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 FAM118BQ9BPY3 351 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 LY75O60449 1722 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 RBM47A0AV96 593 aaKnown RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 FGF18O76093 207 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 PEX6Q13608 980 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 ACAD11Q709F0 780 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 TTC17Q96AE7 1141 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 SHDQ96IW2 340 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 VCXQ9H320 206 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 SIK3Q9Y2K2 1263 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 MTA2O94776 668 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 TMPRSS15P98073 1019 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 TRADDQ15628 312 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 HIST2H2ACQ16777 129 aaPredicted RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 KCTD16Q68DU8 428 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 HIST2H2AA3Q6FI13 130 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 LCLAT1Q6UWP7 414 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 ATAD1Q8NBU5 361 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 ATXN7L3BQ96GX2 97 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 LRGUKQ96M69 825 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 CLPBQ9H078 707 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 CCDC78A2IDD5 438 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 OPHN1O60890 802 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 SUN1O94901 812 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 MIPP30301 263 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 MATKP42679 507 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 CCDC157Q569K6 752 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 TMEM63BQ5T3F8 832 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 PHLDB3Q6NSJ2 640 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 SHC3Q92529 594 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 ZNF669Q96BR6 464 aaPredicted RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 ARHGAP20Q9P2F6 1191 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 STXBP5LQ9Y2K9 1186 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 HBS1LQ9Y450 684 aaKnown RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 IFRD1O00458 451 aaPredicted RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 ENPP3O14638 875 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 HGSO14964 777 aaPredicted RBP10.44□□□□□ -0.74
USP54-201ENST00000339859 ZNF185O15231 689 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 DNTTP04053 509 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 AMPD1P23109 780 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 CES1P23141 567 aa10.44□□□□□ -0.74
USP54-201ENST00000339859 NOVP48745 357 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms