RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 DCLK3Q9C098 648 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 ANLNQ9NQW6 1124 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 ARHGEF38Q9NXL2 777 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 TMEM110-MUSTN1A8MSY1 372 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 I6L893 689 aaPredicted RBP23.01■■□□□ 1.27
SDC3-202ENST00000339394 MOCS2O96007 188 aaPredicted RBP23.01■■□□□ 1.27
SDC3-202ENST00000339394 MIPP30301 263 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 PCK1P35558 622 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 CPNE8Q86YQ8 564 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 BBS7Q8IWZ6 715 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 RNF10Q8N5U6 811 aaKnown RBP23.01■■□□□ 1.27
SDC3-202ENST00000339394 NXPE3Q969Y0 559 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 IGSF9Q9P2J2 1179 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 XPO7Q9UIA9 1087 aaKnown RBP23.01■■□□□ 1.27
SDC3-202ENST00000339394 ZSCAN12O43309 604 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 MAN1A1P33908 653 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 GRM2Q14416 872 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 ARHGAP29Q52LW3 1261 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 CC2D1AQ6P1N0 951 aaPredicted RBP23.01■■□□□ 1.27
SDC3-202ENST00000339394 CCDC185Q8N715 623 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 KIAA1958Q8N8K9 716 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 DEPDC1BQ8WUY9 529 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 OSCP1Q8WVF1 389 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 AZIN2Q96A70 460 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 BTN2A3PQ96KV6 586 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 NCAPGQ9BPX3 1015 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 LINC00597Q9H2U6 94 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 TMPRSS4Q9NRS4 437 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 THG1LQ9NWX6 298 aaKnown RBP23.01■■□□□ 1.27
SDC3-202ENST00000339394 PCSK1NQ9UHG2 260 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 SLC12A6Q9UHW9 1150 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 USP18Q9UMW8 372 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 ZNF510Q9Y2H8 683 aa23.01■■□□□ 1.27
SDC3-202ENST00000339394 MOCS3O95396 460 aa23■■□□□ 1.27
SDC3-202ENST00000339394 ASGR2P07307 311 aa23■■□□□ 1.27
SDC3-202ENST00000339394 TCF4P15884 667 aa23■■□□□ 1.27
SDC3-202ENST00000339394 ADRA1BP35368 520 aa23■■□□□ 1.27
SDC3-202ENST00000339394 SLC11A2P49281 568 aa23■■□□□ 1.27
SDC3-202ENST00000339394 REXO1L1PQ8IX06 675 aa23■■□□□ 1.27
SDC3-202ENST00000339394 ZFYVE19Q96K21 471 aa23■■□□□ 1.27
SDC3-202ENST00000339394 GOLPH3Q9H4A6 298 aa23■■□□□ 1.27
SDC3-202ENST00000339394 TRMT1Q9NXH9 659 aaKnown RBP23■■□□□ 1.27
SDC3-202ENST00000339394 ALG6Q9Y672 507 aa23■■□□□ 1.27
SDC3-202ENST00000339394 WNT6Q9Y6F9 365 aa23■■□□□ 1.27
SDC3-202ENST00000339394 C19orf67A6NJJ6 358 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 PRPSAP2O60256 369 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 IFI16Q16666 785 aaKnown RBP22.99■■□□□ 1.27
SDC3-202ENST00000339394 ARL13BQ3SXY8 428 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 DAAM2Q86T65 1068 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 YAF2Q8IY57 180 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 SLC44A3Q8N4M1 653 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 ATP6V0D2Q8N8Y2 350 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 ASIC4Q96FT7 647 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 PEBP4Q96S96 227 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 FAM83CQ9BQN1 747 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 TRMT61BQ9BVS5 477 aaKnown RBP22.99■■□□□ 1.27
SDC3-202ENST00000339394 DUS2Q9NX74 493 aaKnown RBP22.99■■□□□ 1.27
SDC3-202ENST00000339394 TBC1D14Q9P2M4 693 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 STOML2Q9UJZ1 356 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 A0A0C4DFX4 3053 aa22.99■■□□□ 1.27
SDC3-202ENST00000339394 ACSL4O60488 711 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 PAGE1O75459 146 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 LATS1O95835 1130 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 COMTP21964 271 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 IL1R2P27930 398 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 SLC1A1P43005 524 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 HS1BP3Q53T59 392 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 ADGRF1Q5T601 910 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 TRIM68Q6AZZ1 485 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 C11orf63Q6NUN7 778 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 SLFN11Q7Z7L1 901 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 ADGRG2Q8IZP9 1017 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 NTAN1Q96AB6 310 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 TRIM44Q96DX7 344 aaPredicted RBP22.98■■□□□ 1.27
SDC3-202ENST00000339394 HYOU1Q9Y4L1 999 aa22.98■■□□□ 1.27
SDC3-202ENST00000339394 GRID2IPA4D2P6 1211 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 SLC9A3R1O14745 358 aaPredicted RBP22.97■■□□□ 1.27
SDC3-202ENST00000339394 GDI1P31150 447 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 SSR1P43307 286 aaKnown RBP22.97■■□□□ 1.27
SDC3-202ENST00000339394 SLC25A11Q02978 314 aaKnown RBP22.97■■□□□ 1.27
SDC3-202ENST00000339394 MTA1Q13330 715 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 FAM133BQ5BKY9 247 aaKnown RBP22.97■■□□□ 1.27
SDC3-202ENST00000339394 NADSYN1Q6IA69 706 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 CYP4V2Q6ZWL3 525 aaPredicted RBP22.97■■□□□ 1.27
SDC3-202ENST00000339394 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.97■■□□□ 1.271e-7■■■■■ 32.5
SDC3-202ENST00000339394 LRRC57Q8N9N7 239 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 HAPLN3Q96S86 360 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 HS3ST4Q9Y661 456 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 CAPN6Q9Y6Q1 641 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 GOLGA6L7A0A1B0GV03 622 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 USP27XA6NNY8 438 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 CHADO15335 359 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 PALMO75781 387 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 AIF1P55008 147 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 SCAPQ12770 1279 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 EML3Q32P44 896 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 MS4A13Q5J8X5 152 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 ERMARDQ5T6L9 678 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 PIK3R6Q5UE93 754 aa22.97■■□□□ 1.27
SDC3-202ENST00000339394 TXNRD3NBQ6F5E7 133 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms