RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 KLC1Q07866 573 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 BNIP1Q12981 228 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 PREPLQ4J6C6 727 aaPredicted RBP8.48□□□□□ -1.05
HPS4-201ENST00000336873 C9orf131Q5VYM1 1079 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 IZUMO2Q6UXV1 221 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 PLD5Q8N7P1 536 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 GSTCDQ8NEC7 633 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 GPRC5AQ8NFJ5 357 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 CENPTQ96BT3 561 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 VCPIP1Q96JH7 1222 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 RHOBTB2Q9BYZ6 727 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 WDR55Q9H6Y2 383 aaPredicted RBP8.48□□□□□ -1.05
HPS4-201ENST00000336873 KRT82Q9NSB4 513 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.48□□□□□ -1.05
HPS4-201ENST00000336873 GRID1Q9ULK0 1009 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 STAP1Q9ULZ2 295 aa8.48□□□□□ -1.05
HPS4-201ENST00000336873 MAFBQ9Y5Q3 323 aaPredicted RBP8.48□□□□□ -1.05
HPS4-201ENST00000336873 NCF1BA6NI72 391 aaPredicted RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 NCF1CA8MVU1 366 aaPredicted RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 NCF1P14598 390 aaPredicted RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 PTPN4P29074 926 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 GRIK1P39086 918 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 AP3M2P53677 418 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CTBP1Q13363 440 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.47□□□□□ -1.05
HPS4-201ENST00000336873 FAM117BQ6P1L5 589 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 XRRA1Q6P2D8 792 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 LBX2Q6XYB7 198 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 BBS12Q6ZW61 710 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CDKL3Q8IVW4 592 aaPredicted RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 RNF139Q8WU17 664 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 MFSD3Q96ES6 412 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 PEBP4Q96S96 227 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 PLEKHA5Q9HAU0 1116 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CDHR5Q9HBB8 845 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 PFDN4Q9NQP4 134 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 ABI2Q9NYB9 513 aaPredicted RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 CPSF3Q9UKF6 684 aaKnown RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 CLUHO75153 1309 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CNTNAP2Q9UHC6 1331 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 NPM3O75607 178 aaKnown RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 CSH1P0DML2 217 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CSH2P0DML3 217 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 ASPAP45381 313 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CSE1LP55060 971 aaKnown RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 MAXP61244 160 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 TSTA3Q13630 321 aaPredicted RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 ZNF460Q14592 562 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 KIF19Q2TAC6 998 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 TRIM67Q6ZTA4 783 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 ERO1BQ86YB8 467 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 DNERQ8NFT8 737 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 PCDH19Q8TAB3 1148 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 HTR3CQ8WXA8 447 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 FBXL18Q96ME1 805 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 TRIM4Q9C037 500 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 VCX3BQ9H321 246 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 XAB2Q9HCS7 855 aaKnown RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 KIAA0100Q14667 2235 aaKnown RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 PDHXO00330 501 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 VAPBO95292 243 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 GHRP10912 638 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 EPHA3P29320 983 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 NAGLUP54802 743 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 INHBEP58166 350 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CYP1B1Q16678 543 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CERCAMQ5T4B2 595 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 UNC5AQ6ZN44 842 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 LDB1Q86U70 411 aaPredicted RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 ADGRF2Q8IZF7 708 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 FAM156AQ8NDB6 213 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 CATSPER2Q96P56 530 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 ULBP1Q9BZM6 244 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 ACSS3Q9H6R3 686 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 WDCPQ9H6R7 721 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 DDX43Q9NXZ2 648 aaKnown RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 UTP6Q9NYH9 597 aaKnown RBP8.47□□□□□ -1.05
HPS4-201ENST00000336873 SIX4Q9UIU6 781 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 AURKCQ9UQB9 309 aa8.47□□□□□ -1.05
HPS4-201ENST00000336873 ZNFX1Q9P2E3 1918 aaKnown RBP8.46□□□□□ -1.05
HPS4-201ENST00000336873 TTC24A2A3L6 582 aaPredicted RBP8.46□□□□□ -1.05
HPS4-201ENST00000336873 KPNA7A9QM74 516 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 ATP5HO75947 161 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 LSM8O95777 96 aaKnown RBP8.46□□□□□ -1.05
HPS4-201ENST00000336873 APOEP02649 317 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 BDNFP23560 247 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 ZNF143P52747 638 aaPredicted RBP8.46□□□□□ -1.05
HPS4-201ENST00000336873 RALGPS1Q5JS13 557 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 MFSD5Q6N075 450 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 RPS27LQ71UM5 84 aaKnown RBP8.46□□□□□ -1.05
HPS4-201ENST00000336873 SCUBE1Q8IWY4 988 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 NUP93Q8N1F7 819 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 DIS3LQ8TF46 1054 aaKnown RBP8.46□□□□□ -1.05
HPS4-201ENST00000336873 STK32AQ8WU08 396 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 NRDE2Q9H7Z3 1164 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 PCDH18Q9HCL0 1135 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.46□□□□□ -1.05
HPS4-201ENST00000336873 SLC24A2Q9UI40 661 aa8.46□□□□□ -1.05
HPS4-201ENST00000336873 ASB14A6NK59 587 aa8.46□□□□□ -1.06
HPS4-201ENST00000336873 C2CD2LO14523 706 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms